View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11912_high_9 (Length: 277)
Name: NF11912_high_9
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11912_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 1637453 - 1637206
Alignment:
| Q |
12 |
gagaagaagctcagtgaagctgtgggcagtggcatactcttgaccacccttttccaagcctcaggccaagccaagaaccaacaagggttccttaaggtta |
111 |
Q |
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| T |
1637453 |
gagaagaagctcagtgaagctgtgggcagtggcatactcttgaccacccttttccaagcctcaggccaagccaagaaccaacaagggttccttaaggtta |
1637354 |
T |
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| Q |
112 |
aactcattggtgagggtgagatggactttggatctgctgtgagtggtgctccaatcgacgttgcgcttgtgaaaaccgttgtcaaacagccttacaacat |
211 |
Q |
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| T |
1637353 |
aactcattggtgagggtgagatggactttggatctgctgtgagtggtgctccaatcgacgttgcccttgtgaaaaccgttgtcaaacagccttacaacat |
1637254 |
T |
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| Q |
212 |
ttccattctccaagttgccaaacctatcatcttccctggagttgattc |
259 |
Q |
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| T |
1637253 |
ttccattctccaagttgccaaacctatcatcttccctggagttgattc |
1637206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 1612810 - 1612604
Alignment:
| Q |
50 |
cttgaccacccttttccaagcctcaggccaagccaagaaccaacaagggttccttaaggttaaactcattggtgagggtgagatggactttggatctgct |
149 |
Q |
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| T |
1612810 |
cttgaccaccctttaccaatcctcaggcatcgccgtggaccaacaagggtaccttaaggttaatcgcactagtgacggtgatttggccattggatctgct |
1612711 |
T |
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| Q |
150 |
gtgagtggtgctccaatcgacgttgcgcttgtgaaaaccgttgtcaaacagccttacaacatttccattctccaagttgccaaacctatcatcttccctg |
249 |
Q |
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| T |
1612710 |
gtgagtggtgctccaatcgacgttaagctagtgaaagttgttttcgcccagccctacaacatcaccataatccaagtcgcgaaacctatcttgttccctg |
1612611 |
T |
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| Q |
250 |
gagttga |
256 |
Q |
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| T |
1612610 |
gacttga |
1612604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 1629349 - 1629223
Alignment:
| Q |
47 |
actcttgaccacccttttccaagcctcaggccaagccaagaaccaacaagggttccttaaggttaaactcattggtgagggtgagatggactttggatct |
146 |
Q |
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| T |
1629349 |
actcttgatcaccctttaccaatcctcaggcatcgccgtggaccaacaagggtaccttaaggttaatcgcactagtgacggtgatttggccattggatct |
1629250 |
T |
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| Q |
147 |
gctgtgagtggtgctccaatcgacgtt |
173 |
Q |
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| T |
1629249 |
gctgtgagtggtgctccaatcgacgtt |
1629223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 1622281 - 1622155
Alignment:
| Q |
47 |
actcttgaccacccttttccaagcctcaggccaagccaagaaccaacaagggttccttaaggttaaactcattggtgagggtgagatggactttggatct |
146 |
Q |
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| T |
1622281 |
actcttgatcaccctttaccaatcctcaggcatcgccgtggaccaacaagggtaccttaaggttaatcgcactagtgacggtgatttggccattggatct |
1622182 |
T |
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| Q |
147 |
gctgtgagtggtgctccaatcgacgtt |
173 |
Q |
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| T |
1622181 |
gctgtgagtggtgctcccatcgacgtt |
1622155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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