View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11912_low_3 (Length: 514)
Name: NF11912_low_3
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11912_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 24521083 - 24521556
Alignment:
| Q |
18 |
gaaataagttgtagccaaatagaaccattctcttacgacttaaacatctagagctacatagttcaagtattcaacaataaaggcggctgaagttttcgtt |
117 |
Q |
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|||||||||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
24521083 |
gaaataagttgtagtctaatagaaccattctcttaggacttaaacatctatagctacatagttcaagtattcaacaacaaaggctgctgaagttttcgtt |
24521182 |
T |
|
| Q |
118 |
atttatatgtttttgttatacatgtactctccaccaatattaacttcttgttgttgtctgtgtgcaagcagtggctattttcttcccccattctagatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24521183 |
atttatatgtttttgttatacatgtactctccaccaatattaacttcttgt---tgtctgtgtgcaagcagtggctattttcttcccccattctagatat |
24521279 |
T |
|
| Q |
218 |
tccagaatttcactatatttagtttatctaaatgtctcttttccttctttcaacttgagttttctgttcgatgtgcttcaaaagtgtacctgcatttttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24521280 |
tccagaatttcactatatttagtttatctaaatgtctcttttccttctttcaacttgagttttctgttcgatgtgcttcaaaagtgtacctgcatttttt |
24521379 |
T |
|
| Q |
318 |
attggcatcttatgtaagttgtcctttgttgccagaaagatcaaacatctgtcaatggattcatcaccttcctatggatgggaggcaaagcgtaagagtg |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24521380 |
attggcatcttatgtaa-ttgtcctttgttgccagaaagatcaaacatctgtcaatggattcatcaccttcctatggatgagaggcaaagcgtaagagtg |
24521478 |
T |
|
| Q |
418 |
ttccttactgtctcatatcccatttgacctttatttactttcaaggatttgaagaacatttacacgagccggaattta |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24521479 |
ttccttactgtctcatatcccatttgacctttatttactttcaaggatttgaagaacatttacacgagctggaattta |
24521556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 104 - 304
Target Start/End: Original strand, 24530672 - 24530867
Alignment:
| Q |
104 |
ctgaagttttcgttatttatatgtttttgttatacatgtactctccaccaatattaacttcttgttgttgtctgtgtgcaagcagtggctattttcttcc |
203 |
Q |
| |
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||||||||||| |||||||||||||| | ||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
24530672 |
ctgaagttttcattatttatatgtttctattatatatgtactctctaccaatattaactt---gttgttggctgtgtgcaagcagtggctattttcttcc |
24530768 |
T |
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| Q |
204 |
cccattctagatattccagaatttcactatatttagtttatctaaatgtctcttttccttctttcaacttgagttttctgttcgatgtgcttcaaaagtg |
303 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24530769 |
cccattctagatattccagaatttcactat--ttagtttatctaaaggtctcttttccttctttcaacttgagttttctgttcgatgtgcttcaaaagtg |
24530866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 301 - 504
Target Start/End: Original strand, 24530932 - 24531137
Alignment:
| Q |
301 |
gtgtacctgcattttttattggcatcttatgtaagttgtcctttgttgccagaaagatcaaacatctgtcaatg--gattcatcaccttcctatggatgg |
398 |
Q |
| |
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|||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||| |||| | ||| ||||||||||| |||||||| |
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| T |
24530932 |
gtgtgcctgcattttttatttggatcttatgtaagttgtcctttgttgccaggaagatccaacatcagtcaccgatgatccatcaccttcccatggatgg |
24531031 |
T |
|
| Q |
399 |
gaggcaaagcgtaagagtgttccttactgtctcatatcccatttgacctttatttactttcaaggatttgaagaacatttacacgagccggaatttattg |
498 |
Q |
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| || ||||| ||||| ||||| ||||||||||||| || |||||||||||| |||| |||| | ||||| | ||| |||||||| ||||||||||| |
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| T |
24531032 |
gcggtaaagcctaagaacgttccgaactgtctcatatcacacttgacctttattgacttccaagactatgaaggaaattcacacgagctggaatttattg |
24531131 |
T |
|
| Q |
499 |
cctatg |
504 |
Q |
| |
|
|||||| |
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|
| T |
24531132 |
cctatg |
24531137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 465
Target Start/End: Original strand, 24935479 - 24935569
Alignment:
| Q |
375 |
gattcatcaccttcctatggatgggaggcaaagcgtaagagtgttccttactgtctcatatcccatttgacctttatttactttcaaggat |
465 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||| ||||||||| | | ||| |||||||||||||||||||| ||||||||||| |
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| T |
24935479 |
gattcatcaccttcatataaatgggaggcaaagcctaaaagtgttcctaaatacctcgtatcccatttgacctttattcgctttcaaggat |
24935569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 26028041 - 26028115
Alignment:
| Q |
384 |
ccttcctatggatgggaggcaaagcgtaagagtgttccttactgtctcatatcccatttgacctttatttacttt |
458 |
Q |
| |
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||||| ||| ||||||||||||||| ||| ||||||||| | || |||||||||||||||||||||||| ||||| |
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| T |
26028041 |
ccttcatatagatgggaggcaaagcctaaaagtgttcctaaatgcctcatatcccatttgacctttattcacttt |
26028115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 452
Target Start/End: Original strand, 24959493 - 24959570
Alignment:
| Q |
375 |
gattcatcaccttcctatggatgggaggcaaagcgtaagagtgttccttactgtctcatatcccatttgacctttatt |
452 |
Q |
| |
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||||| |||||| | |||||||||||| | |||| | | ||||||||| | |||||| |||||||||||||||||||| |
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| T |
24959493 |
gattcttcacctgcatatggatgggagacgaagcctcaaagtgttcctaagtgtctcgtatcccatttgacctttatt |
24959570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 17101421 - 17101454
Alignment:
| Q |
18 |
gaaataagttgtagccaaatagaaccattctctt |
51 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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|
| T |
17101421 |
gaaataagttgtagcccaatagaaccattctctt |
17101454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 40586832 - 40586918
Alignment:
| Q |
375 |
gattcatcaccttcctatggatgggaggcaaagcgtaagagtgttccttactgtctcatatcccatttgacctttatttactttcaa |
461 |
Q |
| |
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|||||||||||||| ||||||||||||| |||| || ||||||||| | |||||| |||||||||||||||||||| || ||||| |
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| T |
40586832 |
gattcatcaccttcatatggatgggaggtgaagccaaaaagtgttcctaaatgtctcgtatcccatttgacctttattgaccttcaa |
40586918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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