View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11912_low_5 (Length: 344)

Name: NF11912_low_5
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11912_low_5
NF11912_low_5
[»] chr5 (6 HSPs)
chr5 (3-330)||(43322598-43322925)
chr5 (61-112)||(40549293-40549344)
chr5 (57-112)||(42783259-42783314)
chr5 (17-111)||(42564928-42565022)
chr5 (60-130)||(42840513-42840583)
chr5 (63-127)||(42629633-42629697)
[»] chr1 (2 HSPs)
chr1 (56-130)||(51874705-51874779)
chr1 (48-130)||(368801-368883)
[»] chr2 (1 HSPs)
chr2 (143-188)||(44141526-44141571)
[»] scaffold0129 (1 HSPs)
scaffold0129 (57-130)||(33548-33621)
[»] chr3 (1 HSPs)
chr3 (69-130)||(44550492-44550553)
[»] scaffold0054 (1 HSPs)
scaffold0054 (60-132)||(39820-39892)
[»] chr6 (1 HSPs)
chr6 (62-130)||(32960737-32960805)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 43322925 - 43322598
Alignment:
Q  3 aagcaaatgttgcacttcttcccaactccaattggacgatgaatgaaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagtt 102  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43322925 aagcaaatgttacccttcttcccaactccaattggacgatgaatgaaaggtatgggcccaacaataaagagtttgatccataatttctttacaccgagtt 43322826  T
Q  103 cacccaaaatcgaaatatgaaaagtagtagcatctggacaatttgagattaaagcaattgactcatttaacaccaccaaacatctctcaatggaataata 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43322825 cacccaaaatcgaaatatgaaaagtagtagcatttggacaatttgagattaaagcaattgactcatttaacaccaccaaacatctctcaatggaataata 43322726  T
Q  203 atcacaactttcatccacatctaacaacataggtgttgtgaaaaacaactcgttgacgaagtcaaatgacaccaaacagtcttctttatcatgtgatgaa 302  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43322725 ataacaactttcatccacatctaacaacataggtgttgtgaaaaacaactagttgacgaagtcaaatgacaccaaacagtcttctttatcatgtgatgaa 43322626  T
Q  303 ctgctgctccaccaatgacacactccat 330  Q
    ||| ||||||||||||||||||||||||    
T  43322625 ctgttgctccaccaatgacacactccat 43322598  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 40549344 - 40549293
Alignment:
Q  61 caacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 112  Q
    |||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  40549344 caacaacaaagagtttgatccatgattccttcacaccgacttcacccaaaat 40549293  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 42783314 - 42783259
Alignment:
Q  57 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 112  Q
    |||||||||||||||||||| |||||| |||  |||||||  ||||||||||||||    
T  42783314 ggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaat 42783259  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 42564928 - 42565022
Alignment:
Q  17 cttcttcccaactccaattggacgatgaatgaaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaa 111  Q
    |||||| || |||||||| |||  ||||| | |||| | ||| |||||||| || |||||||||||| ||| ||| ||||| |||||||||||||    
T  42564928 cttctttcccactccaataggaatatgaacgcaaggcagtggtccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaa 42565022  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 42840513 - 42840583
Alignment:
Q  60 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 130  Q
    ||||||||||||| |||  ||||| |||  |||||||| |||||||||||||| ||||| ||||| |||||    
T  42840513 ccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtagt 42840583  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 42629633 - 42629697
Alignment:
Q  63 acaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagt 127  Q
    |||||||| |||||||||||| | | ||| || |||| |||||||||||| || |||||||||||    
T  42629633 acaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaagt 42629697  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 51874705 - 51874779
Alignment:
Q  56 tggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 130  Q
    |||||||||||  || |||||||||||| ||| ||| ||||  |||||||||||||| ||||||| |||||||||    
T  51874705 tggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagt 51874779  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 368883 - 368801
Alignment:
Q  48 aaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 130  Q
    ||||||| ||| |||||||| ||||||||||||||| ||| ||| ||||| | |||||| | ||| || || |||||||||||    
T  368883 aaaggtaatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 44141526 - 44141571
Alignment:
Q  143 atttgagattaaagcaattgactcatttaacaccaccaaacatctc 188  Q
    ||||||||| |||||||||||| ||||||||||||||||| |||||    
T  44141526 atttgagatcaaagcaattgacccatttaacaccaccaaatatctc 44141571  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 33548 - 33621
Alignment:
Q  57 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 130  Q
    ||||||| ||||||||||||  ||||  | | ||| ||||| |||||||||||||| ||||| |||||||||||    
T  33548 ggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagt 33621  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 44550492 - 44550553
Alignment:
Q  69 aagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 130  Q
    ||||||||  ||||||||||||| ||||||| |||||| ||||| || || |||||||||||    
T  44550492 aagagtttagtccataatttcttcacaccgaattcacctaaaattgatatttgaaaagtagt 44550553  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 39820 - 39892
Alignment:
Q  60 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagtag 132  Q
    |||||| ||||||||||||||||  ||| ||| |  ||||||||||||||||| |  || |||||||||||||    
T  39820 ccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtagtag 39892  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 32960737 - 32960805
Alignment:
Q  62 aacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 130  Q
    |||||||||||||||||||||  ||| ||| | ||||| |||| ||||||| || | ||||||||||||    
T  32960737 aacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagtagt 32960805  T

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