View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11913_low_2 (Length: 304)
Name: NF11913_low_2
Description: NF11913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11913_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 48043619 - 48043734
Alignment:
| Q |
31 |
gcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaa |
129 |
Q |
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| T |
48043619 |
gcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaa |
48043718 |
T |
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| Q |
130 |
ccagcagtggaatccc |
145 |
Q |
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| T |
48043719 |
ccagcagtggaatccc |
48043734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 48051600 - 48051701
Alignment:
| Q |
39 |
tttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtg |
138 |
Q |
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| T |
48051600 |
tttgaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatcttgttacttagaaccagcagtg |
48051699 |
T |
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| Q |
139 |
ga |
140 |
Q |
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|| |
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| T |
48051700 |
ga |
48051701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 48043874 - 48043932
Alignment:
| Q |
229 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatc |
287 |
Q |
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| T |
48043874 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatc |
48043932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
| Q |
56 |
acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag |
133 |
Q |
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| T |
48056891 |
acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag |
48056968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
| Q |
77 |
tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc |
144 |
Q |
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| T |
48045485 |
tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc |
48045552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
| Q |
189 |
ggaattgaatctgagatcacccttatcactccattcttt |
227 |
Q |
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| T |
48043794 |
ggaatcgaatctgagatcacccttatcactccattcttt |
48043832 |
T |
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