View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11914_high_5 (Length: 340)
Name: NF11914_high_5
Description: NF11914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11914_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 45 - 319
Target Start/End: Original strand, 1344322 - 1344596
Alignment:
| Q |
45 |
gattataattatgatgctaatgctatattgtgttgaacacggtgcatgatttcaaatattagaatcatgtaaatcttttagaaagttccacttctatgag |
144 |
Q |
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| T |
1344322 |
gattataattatcatgctaatgctatattgtgctgaacacggtgcatgatttcaaatattagaatgacgtaaatcttttagaaagttccacttctatgag |
1344421 |
T |
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| Q |
145 |
tgcttgagctatctactcgatcgataatctcattttatgtcgatcactcgacaatatctgttttggtagagtaagcatttttaaattttgaatagcttta |
244 |
Q |
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| T |
1344422 |
tgcttgagctatctacttaatcggtaatctcattttatgccgatcgctctacaatatctgttttggtagagtaagcatttttaaattttgaattgcttca |
1344521 |
T |
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| Q |
245 |
tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttacttttcggtttctcaatgttaa |
319 |
Q |
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| T |
1344522 |
tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttactatttggtttctcaatgttaa |
1344596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 1355189 - 1354967
Alignment:
| Q |
96 |
tcaaatattagaatcatgtaaatcttttagaaagttccacttctatgagtgcttgagctatctactcgatcgataatctcattttatgtcgatcactcga |
195 |
Q |
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| T |
1355189 |
tcaaatattaggatcatgtaaatcttttagaaagttccatttctatgagtgcttgagctatctactcaatcgataatctcgttttatgtcgatcacttca |
1355090 |
T |
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| Q |
196 |
caatatctgttttggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgt |
295 |
Q |
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| T |
1355089 |
caatatctgttttggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaagaatttccttgtgattgtgaagtcaatgtgt |
1354990 |
T |
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| Q |
296 |
tacttttcggtttctcaatgtta |
318 |
Q |
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|||| || |||||| ||||||| |
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| T |
1354989 |
tactatttagtttcttaatgtta |
1354967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 29052064 - 29051955
Alignment:
| Q |
209 |
ggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttacttttcggttt |
308 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
29052064 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttgtgattgtgaagtcagtgtgttactatttggttt |
29051965 |
T |
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| Q |
309 |
ctcaatgtta |
318 |
Q |
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|||||||||| |
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| T |
29051964 |
ctcaatgtta |
29051955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 34265403 - 34265359
Alignment:
| Q |
220 |
catttttaaattttgaatagctttatcactatttcaactatgcaa |
264 |
Q |
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|||||| ||||||||||| |||| ||| ||||||||||||||||| |
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| T |
34265403 |
cattttaaaattttgaattgcttcatccctatttcaactatgcaa |
34265359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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