View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11914_high_6 (Length: 241)
Name: NF11914_high_6
Description: NF11914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11914_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 9452955 - 9452734
Alignment:
| Q |
19 |
atggtgtgttgtcaactcattctggaagcttttgtgaaaaatcctctcgcggtatctagcatttttcttataaaatatctttgccatctcaaattgtttt |
118 |
Q |
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| T |
9452955 |
atggtgtgttgccatctcattctagaagctttcgtgaaaaatcctctcgcggtatctagcatttttcttataaaatatctttgccatctcaaattgtttt |
9452856 |
T |
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| Q |
119 |
tt-gacaaagttttatttatctaaccaaatctaatttatgtactattataatagagcaaggaattgttaacctgatacttgacaaagttttatttccttg |
217 |
Q |
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| T |
9452855 |
tttgacaaagttttatttttctaaccaaatctaatttatgtactatcataatagagcaaggaattgttaacctgatacttgacaaagttttatttccctg |
9452756 |
T |
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| Q |
218 |
atttttaattacgcaattataatt |
241 |
Q |
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| T |
9452755 |
a--tttcattacacaattataatt |
9452734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 21546588 - 21546721
Alignment:
| Q |
86 |
ttataaaatatctttgccatctcaaattgttttttgacaaagttttatttatctaaccaaatctaatttatgtactattataatagagcaaggaattgtt |
185 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21546588 |
ttataaaatatctttgtcatatcaaattgttttttgacaaagttttatttatctaaccaaatctaatttatgtactatcataatagagcaaggaattgtt |
21546687 |
T |
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| Q |
186 |
aacctgatacttgacaaagttttatttccttgattt |
221 |
Q |
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| T |
21546688 |
aacctgttacttgac--agttttatttccctgattt |
21546721 |
T |
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