View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11914_low_2 (Length: 484)
Name: NF11914_low_2
Description: NF11914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11914_low_2 |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 4150018 - 4149557
Alignment:
| Q |
18 |
caagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattgatcgtttctacaaagggtaagagatgttaaagtgtca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||| |||| ||||||||||||||||||||||||||| | |
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| T |
4150018 |
caagctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattgattgtttgtacaaagggtaagagatgttaaagtgtga |
4149919 |
T |
|
| Q |
118 |
catgaaacgcagggaagtggatagtgttgatgattaaaggtcgaatctacatctaatagctggacaccgtggtcaaatgcatattttataacccacttga |
217 |
Q |
| |
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||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
4149918 |
catgaaacgtagggaagtggatagtgttgataataaaaggtcgaatctacatctaatagctggacaccgtggtcaaatgcgtattttataacccagttga |
4149819 |
T |
|
| Q |
218 |
ggtggcgaggccagatgacaccttcgcggtgaagatggagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgagacacgaatctgatgaa |
317 |
Q |
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||| || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
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| T |
4149818 |
ggtagccaggccagatgacaccatcgcggtgaagatcgagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgatacacgaatatggtgaa |
4149719 |
T |
|
| Q |
318 |
acccttccgagtctcgaagtggcaacaacttattgaaagaacaggaatatacttccagagattcttccatctcgcggacagaacacaggtttgaacggcc |
417 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
4149718 |
acccatccgagtctcgaagtggcaagaacttattgaaagaacaggaatatacttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcc |
4149619 |
T |
|
| Q |
418 |
tctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaaatctctgcttct |
479 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
4149618 |
tctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaatcactgattct |
4149557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Complemental strand, 4165787 - 4165329
Alignment:
| Q |
21 |
gctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattgatcgtttctacaaagggtaagagatgttaaagtgtcacat |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
4165787 |
gctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattgattgtttgtacaaagggtaagagatgttaaagtgtgacat |
4165688 |
T |
|
| Q |
121 |
gaaacgcagggaagtggatagtgttgatgattaaaggtcgaatctacatctaatagctggacaccgtggtcaaatgcatattttataacccacttgaggt |
220 |
Q |
| |
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||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
4165687 |
aaaacgtagggaagtggatagtgttgataataaaaggtcgaatctacatctaatagctggacaccgtggtcaaatgcgtattttataacccacatgaggt |
4165588 |
T |
|
| Q |
221 |
ggcgaggccagatgacaccttcgcggtgaagatggagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgagacacgaatctgatgaaacc |
320 |
Q |
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|| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
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| T |
4165587 |
agccaggccagatgacaccatcgcggtgaagatcgagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgatacacgaatatggtgaaacc |
4165488 |
T |
|
| Q |
321 |
cttccgagtctcgaagtggcaacaacttattgaaagaacaggaatatacttccagagattcttccatctcgcggacagaacacaggtttgaacggcctct |
420 |
Q |
| |
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| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
4165487 |
catccgagtctcgaagtggcaagaacttattgaaagaacaggaatatacttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctct |
4165388 |
T |
|
| Q |
421 |
ttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaaatctctgcttct |
479 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
4165387 |
ttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaatcactgattct |
4165329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 470
Target Start/End: Original strand, 7115543 - 7115645
Alignment:
| Q |
368 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
467 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7115543 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7115642 |
T |
|
| Q |
468 |
atc |
470 |
Q |
| |
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||| |
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| T |
7115643 |
atc |
7115645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 470
Target Start/End: Original strand, 7120615 - 7120717
Alignment:
| Q |
368 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
467 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7120615 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7120714 |
T |
|
| Q |
468 |
atc |
470 |
Q |
| |
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||| |
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|
| T |
7120715 |
atc |
7120717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 470
Target Start/End: Original strand, 7124019 - 7124121
Alignment:
| Q |
368 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
467 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7124019 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7124118 |
T |
|
| Q |
468 |
atc |
470 |
Q |
| |
|
||| |
|
|
| T |
7124119 |
atc |
7124121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 8656649 - 8656740
Alignment:
| Q |
369 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaat |
460 |
Q |
| |
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||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| |
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|
| T |
8656649 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaat |
8656740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 32413704 - 32413613
Alignment:
| Q |
369 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaat |
460 |
Q |
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||||||||||||||||||||| | ||||| || || ||||||||||| | ||||||||||||| || |||||| ||||||| ||||||| |
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| T |
32413704 |
cttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaat |
32413613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 19658349 - 19658395
Alignment:
| Q |
370 |
ttccagagattcttccatctcgcggacagaacacaggtttgaacggc |
416 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
19658349 |
ttccagagattcctccatctcgtggacaaaacacaagtttgaacggc |
19658395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 19675188 - 19675234
Alignment:
| Q |
370 |
ttccagagattcttccatctcgcggacagaacacaggtttgaacggc |
416 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| ||||||||||| |
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|
| T |
19675188 |
ttccagagattcctccatctcgtggacaaaacacaagtttgaacggc |
19675234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 2321 - 2256
Alignment:
| Q |
368 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaa |
433 |
Q |
| |
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|||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| |
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|
| T |
2321 |
acttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaa |
2256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 433
Target Start/End: Complemental strand, 1537 - 1473
Alignment:
| Q |
369 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaa |
433 |
Q |
| |
|
||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| |
|
|
| T |
1537 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaa |
1473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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