View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11914_low_3 (Length: 483)
Name: NF11914_low_3
Description: NF11914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11914_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 9452748 - 9452418
Alignment:
| Q |
8 |
tacacaattataattatataatagtctgattctagagacatggatagttaaactgattgtaaaattatatagcaattccttcaaaacactgaaaatttct |
107 |
Q |
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| T |
9452748 |
tacacaattataattatataatagtctgattctagagacattaatagttaaactgactgtaaaattatatagcaattccttcaaaacactgaaaatttct |
9452649 |
T |
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| Q |
108 |
tgtacatgtattatagagtaattaaggttgttgaagatgtaagtaatagcaaattctaaaaatatatagatgtaagtaattaagccagagtagtgaattt |
207 |
Q |
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| T |
9452648 |
tgtacatgtatta----gtaattaaggctgttgaagatgtaagtaatagcaatgtctaaaaatatatagatgtaagtaattaagccagagtagtgaattt |
9452553 |
T |
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| Q |
208 |
tacgaaagcatgtaaatgataaagttcatttcattcagaatattaaataatagcaatgtctaaaaacaaagacttgtccaataacaaaatgcttaagaga |
307 |
Q |
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| T |
9452552 |
tacgaaaacatgtaaatgatagagttcattgcattcagaatattaaataatagcaatgtctaaaaacaaagacttgtccaataacaaaattcttaagaga |
9452453 |
T |
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| Q |
308 |
taga-cagaacagaaacaaccaaggtaattgttct |
341 |
Q |
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| T |
9452452 |
taaaccagaacagaaacaaccaaggtaattgttct |
9452418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 9452368 - 9452290
Alignment:
| Q |
391 |
tagatgctcttcgtcaacaacagcacgttcaactctattccttaggttcaattttgacgtgcaacatcttggaatgatg |
469 |
Q |
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| T |
9452368 |
tagatgctcttcgtcaacaacaacatgttcaactctattccttaggttcaattttgacgttcaccatctttgaatgatg |
9452290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 21546725 - 21547057
Alignment:
| Q |
8 |
tacacaattataattatataatagtctgattctagagacatggatagttaaactgattgtaaaattatatagcaattccttcaaaacact--gaaaattt |
105 |
Q |
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| T |
21546725 |
tacacagttataattatataatagtttgattctagagacatgaatagttaaactgattgtaaa-ttatatagcaattccttcaaaacactctgaaaattt |
21546823 |
T |
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| Q |
106 |
cttgtacatgtattatagagtaattaaggttgttgaagatgtaagtaatagcaaattctaaaaatatatagatgtaagtaattaagccagagtagtgaat |
205 |
Q |
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| T |
21546824 |
cttgtacatgtaatatagagtaattaaggccgataaagatgtaagtaagaacaatgtttaaaaatatatagatgtaagtaattaagctagagtagtgaat |
21546923 |
T |
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| Q |
206 |
tttacgaaagcatgtaaatgataaagttcatttcattcagaatattaaataatagcaatgtctaaaaacaaagacttgtccaataacaaaatgcttaaga |
305 |
Q |
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| T |
21546924 |
tttacgaaaacatgtaaatgatagagttcattgcattcagaatattaaataatagcaatgtctacaaacaaagacttgtccaataacaaaatgcttaaga |
21547023 |
T |
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| Q |
306 |
gatagacagaacagaaacaaccaaggtaattgtt |
339 |
Q |
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| T |
21547024 |
gatgaacagaacagaaacaaccatggtaattgtt |
21547057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 21547109 - 21547178
Alignment:
| Q |
391 |
tagatgctcttcgtcaacaacagcacgttcaactctattccttaggttcaattttgacgtgcaacatctt |
460 |
Q |
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| T |
21547109 |
tagatgctcctcgtcaacaacagcacatgcaactctaatccttaggttcaattttgacgtgcaccatctt |
21547178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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