View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11914_low_4 (Length: 364)

Name: NF11914_low_4
Description: NF11914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11914_low_4
NF11914_low_4
[»] chr3 (6 HSPs)
chr3 (134-309)||(17501552-17501727)
chr3 (20-105)||(17501753-17501838)
chr3 (20-102)||(20611261-20611343)
chr3 (20-102)||(19175959-19176041)
chr3 (20-89)||(1653452-1653521)
chr3 (20-99)||(30935922-30935998)
[»] chr6 (6 HSPs)
chr6 (148-347)||(23809387-23809585)
chr6 (148-347)||(2628145-2628343)
chr6 (148-347)||(22978818-22979017)
chr6 (20-102)||(16510811-16510893)
chr6 (27-102)||(12793600-12793675)
chr6 (20-82)||(9223381-9223443)
[»] chr2 (2 HSPs)
chr2 (20-102)||(39339354-39339436)
chr2 (20-102)||(31902907-31902989)
[»] chr7 (3 HSPs)
chr7 (20-102)||(47326393-47326475)
chr7 (20-102)||(38305716-38305799)
chr7 (20-102)||(3420181-3420264)
[»] chr8 (4 HSPs)
chr8 (20-96)||(10551784-10551860)
chr8 (20-102)||(34389535-34389618)
chr8 (20-84)||(34866598-34866662)
chr8 (45-102)||(31210610-31210667)
[»] chr1 (4 HSPs)
chr1 (20-102)||(41919938-41920021)
chr1 (20-82)||(4651260-4651322)
chr1 (20-102)||(24685032-24685114)
chr1 (20-48)||(17032911-17032939)
[»] chr4 (2 HSPs)
chr4 (20-88)||(30963919-30963987)
chr4 (19-99)||(46699456-46699535)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 134 - 309
Target Start/End: Complemental strand, 17501727 - 17501552
Alignment:
Q  134 atgcagtgttatcaaagttgtattaggttcaatttctttaatataatgtatgttgcgatagctttatacttaatgtcattaggttctgtgagaaacatat 233  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17501727 atgcagtgttatcaaagttggattaggttcaatttctttaatataatgtatgttgcgatagctttatacttaatggcattaggttctgtgagaaacatat 17501628  T
Q  234 ttcttgggtgtcatcattaagtctttaaaggagtgtgtttctttggtgtcaggattgtaaatctacttgcttatac 309  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17501627 ttcttgggtgtcatcattaggtcttgaaaggagtgtgtttctttggtgtcaggattgcaaatctacttgcttatac 17501552  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 17501838 - 17501753
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgataca 105  Q
    |||||||| |||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||| |||||||||||||    
T  17501838 ttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctattttttggtgaggatgtttggcagcgtagtgataca 17501753  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 20611261 - 20611343
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||| |  |||||||||||||||||||||||||||| |||||||    
T  20611261 ttgttgttggatttcctcttcatctagatctatatttgtgttgatgcctgtttcttggtgaggatgtttggcggcatagtgat 20611343  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 19175959 - 19176041
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    |||||||||||||| |||| ||| ||||| |||||||||| || |   |||||||||||||||||||||||||||||| ||||    
T  19175959 ttgttgttggattttgtctccctttagatttatgtttgtgctgttgcttgtttcttggtgaggatgtttggcggcgtaatgat 19176041  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 1653521 - 1653452
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttg 89  Q
    |||||||||||||||||||||||| | || |||||||||||||||  ||||||||| ||||||| |||||    
T  1653521 ttgttgttggatttcgtcttcctccatatttatgtttgtgttgctgcctgtttcttcgtgaggaggtttg 1653452  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 30935998 - 30935922
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagt 99  Q
    |||||||||| |||||||   |||||||| ||||||| ||||| | ||||||||||||||||  ||||||||||| ||||    
T  30935998 ttgttgttgggtttcgtc---ctctagatttatgtttttgttgttgtctgtttcttggtgagattgtttggcggcatagt 30935922  T

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Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 148 - 347
Target Start/End: Original strand, 23809387 - 23809585
Alignment:
Q  148 aagttgtattaggttcaatttctttaatataatgtatgttgcgatagctttatacttaatgtcattaggttctgtgagaaacatatttcttgggtgtcat 247  Q
    |||||| |||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  23809387 aagttggattaggttcattttctttaatataatgtatgttaggataactttatacttaatgtcattaggttttgaaagaaacatatttctttggtgtcat 23809486  T
Q  248 cattaagtctttaaaggagtgtgtttctttggtgtcaggattgtaaatctacttgcttatacattatttttgtcctctatttattgcaacaggaatctct 347  Q
    ||||| || || |||| |   |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  23809487 cattaggttttgaaagaaacatgtttctttggtgttaggattgcaaatctacttgcttatacatta-ttttgtcctctctttattgcaacaggaatctct 23809585  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 347
Target Start/End: Complemental strand, 2628343 - 2628145
Alignment:
Q  148 aagttgtattaggttcaatttctttaatataatgtatgttgcgatagctttatacttaatgtcattaggttctgtgagaaacatatttcttgggtgtcat 247  Q
    |||||| |||||||||| ||||||||||||||||||||||  || | |||||||||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  2628343 aagttggattaggttcattttctttaatataatgtatgttaggacaactttatacttaatgtcattaggttttgaaagaaacatatttctttggtgtcat 2628244  T
Q  248 cattaagtctttaaaggagtgtgtttctttggtgtcaggattgtaaatctacttgcttatacattatttttgtcctctatttattgcaacaggaatctct 347  Q
    ||||| || || |||| |   |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  2628243 cattaggttttgaaagaaacatgtttctttggtgttaggattgcaaatctacttgcttatacatta-ttttgtcctctctttattgcaacaggaatctct 2628145  T

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Target: chr6; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 148 - 347
Target Start/End: Complemental strand, 22979017 - 22978818
Alignment:
Q  148 aagttgtattaggttcaatttctttaatataatgtatgttgcgatagctttatacttaa-tgtcattaggttctgtgagaaacatatttcttgggtgtca 246  Q
    |||||| |||||||||| ||||||||||||||||||||||  |||| |||||||||||| |||||||||||| ||  ||||||||||||||| |||||||    
T  22979017 aagttggattaggttcattttctttaatataatgtatgttaggataactttatacttaaatgtcattaggttttgaaagaaacatatttctttggtgtca 22978918  T
Q  247 tcattaagtctttaaaggagtgtgtttctttggtgtcaggattgtaaatctacttgcttatacattatttttgtcctctatttattgcaacaggaatctc 346  Q
    |||||| || || |||| |   |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  22978917 tcattaggttttgaaagaaacatgtttctttggtgttaggattgcaaatctacttgcttatacatta-ttttgtcctctctttattgcaacaggaatctc 22978819  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 16510893 - 16510811
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |   |||||||||||||||||| ||||||||||||||||    
T  16510893 ttgttgttggatgtcgtcttcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatggttggcggcgtagtgat 16510811  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 12793600 - 12793675
Alignment:
Q  27 tggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    |||||||||||||||||| ||||||  ||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  12793600 tggatttcgtcttcctctggatctaaatttgtgttgctgtctgtttcttggtgagggtgtttggcggcatagtgat 12793675  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 9223381 - 9223443
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgagg 82  Q
    |||||||||||||||||||||||||  || | |||||||||||| | ||||||||||||||||    
T  9223381 ttgttgttggatttcgtcttcctctgaatttgtgtttgtgttgcctcctgtttcttggtgagg 9223443  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 39339436 - 39339354
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39339436 ttgttgttggatttcctcttcctctagatctatatttgtgttgctgtctgtttcttggtgaggatgtttggcggcgtagtgat 39339354  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 31902989 - 31902907
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||| ||||| | |||||||||||||||||    
T  31902989 ttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttgtttcttgctgaggctatttggcggcgtagtgat 31902907  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 47326475 - 47326393
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    ||||||||||||||| |||||||||||||| || |||||||||||   |||||||||||||||||||||||||||||||||||    
T  47326475 ttgttgttggatttcctcttcctctagatcaatatttgtgttgctgcttgtttcttggtgaggatgtttggcggcgtagtgat 47326393  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 38305716 - 38305799
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatg-tttggcggcgtagtgat 102  Q
    |||||||||||||||||||||||||||||  |||||||||||| |   |||||||||||||||||| ||||| |||||||||||    
T  38305716 ttgttgttggatttcgtcttcctctagattgatgtttgtgttgttgcttgtttcttggtgaggatgttttggtggcgtagtgat 38305799  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 3420264 - 3420181
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatg-tttggcggcgtagtgat 102  Q
    |||||||| | ||||||||||||||| || ||||  ||||||| |   |||||||||||||||||| ||||||| |||||||||    
T  3420264 ttgttgtttggtttcgtcttcctctaaatttatgcatgtgttgttgcttgtttcttggtgaggatgttttggcgacgtagtgat 3420181  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 10551784 - 10551860
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgt 96  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||  |||||| ||||||    
T  10551784 ttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtctatttcttggagagactgtttgtcggcgt 10551860  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 34389618 - 34389535
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatg-tttggcggcgtagtgat 102  Q
    ||||||| | |||||||| |||||||||| ||||||||||||| |   |||||||||||||||||| |||||||||||||||||    
T  34389618 ttgttgtggaatttcgtcctcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatgttttggcggcgtagtgat 34389535  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 34866662 - 34866598
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggat 84  Q
    |||||||||||||||||||||||||| || ||||||||||||| |   |||||||||||||||||    
T  34866662 ttgttgttggatttcgtcttcctctaaatttatgtttgtgttgttgcttgtttcttggtgaggat 34866598  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 31210667 - 31210610
Alignment:
Q  45 agatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    |||||| | |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  31210667 agatctgtatttgtgttgctgcctgtttcttggtgacgatgtttggcggcgtagtgat 31210610  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 41919938 - 41920021
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatg-tttggcggcgtagtgat 102  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| |   |||||||||||||||||| |||||||||||||||||    
T  41919938 ttgttgtgggatttcatcttcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatgttttggcggcgtagtgat 41920021  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 4651260 - 4651322
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgagg 82  Q
    |||||||| | |||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  4651260 ttgttgttaggtttcgtcttcctcatgatctatgtttgtgttgctgtctgtttcttggtgagg 4651322  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 24685114 - 24685032
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagtgat 102  Q
    ||||||||| |||| ||||  || ||||| ||||||||||||| |   |||||||||||||||||||||||||||||||||||    
T  24685114 ttgttgttgaattttgtctctctttagatttatgtttgtgttgttgcttgtttcttggtgaggatgtttggcggcgtagtgat 24685032  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 17032911 - 17032939
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagat 48  Q
    |||||||||||||||||||||||||||||    
T  17032911 ttgttgttggatttcgtcttcctctagat 17032939  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 30963919 - 30963987
Alignment:
Q  20 ttgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgttt 88  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |   |||||||||||||||||||||    
T  30963919 ttgtggttggatttcgtcttcctctagatttatgtttgtgttgttgcttgtttcttggtgaggatgttt 30963987  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 46699535 - 46699456
Alignment:
Q  19 attgttgttggatttcgtcttcctctagatctatgtttgtgttgctttctgtttcttggtgaggatgtttggcggcgtagt 99  Q
    |||||||||||| ||| ||||||| | ||||| |||||| |||| |  |||| |||||||||||  |||||||||||||||    
T  46699535 attgttgttggaattcatcttcctattgatctgtgtttg-gttgatgcctgtgtcttggtgaggtggtttggcggcgtagt 46699456  T

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