View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11914_low_7 (Length: 201)
Name: NF11914_low_7
Description: NF11914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11914_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 2892343 - 2892178
Alignment:
| Q |
23 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaa |
122 |
Q |
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| T |
2892343 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaa |
2892244 |
T |
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| Q |
123 |
ttgatccagtaacacatactcctagacttgacttattggacctctcttctattctatgttcatctc |
188 |
Q |
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| T |
2892243 |
ttgatccagtaacacatactcctagacttgacttattggacctctcttctattctatgttcatctc |
2892178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 37881392 - 37881310
Alignment:
| Q |
23 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaag |
105 |
Q |
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| T |
37881392 |
aggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaag |
37881310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 36246514 - 36246631
Alignment:
| Q |
23 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaa |
122 |
Q |
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| T |
36246514 |
aggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaa |
36246613 |
T |
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| Q |
123 |
ttgatccagtaacacata |
140 |
Q |
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| T |
36246614 |
ttgatcctgtgacacata |
36246631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 50777543 - 50777504
Alignment:
| Q |
47 |
ttaccaggaaggacggacaatgaaataaaaaactattgga |
86 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| |
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| T |
50777543 |
ttaccaggaagaacggacaatgaaataaaaaattattgga |
50777504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 53557723 - 53557767
Alignment:
| Q |
47 |
ttaccaggaaggacggacaatgaaataaaaaactattggaacaca |
91 |
Q |
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| T |
53557723 |
ttacctggaagaacagacaatgacataaaaaactattggaacaca |
53557767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 38707205 - 38707243
Alignment:
| Q |
48 |
taccaggaaggacggacaatgaaataaaaaactattgga |
86 |
Q |
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||||||| || |||||||||||||||||||||||||||| |
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| T |
38707205 |
taccaggtagaacggacaatgaaataaaaaactattgga |
38707243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 9622085 - 9622133
Alignment:
| Q |
45 |
gattaccaggaaggacggacaatgaaataaaaaactattggaacacaca |
93 |
Q |
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||||||||||| | || |||||||||||||| ||||| ||||||||||| |
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| T |
9622085 |
gattaccaggacgaacagacaatgaaataaagaactactggaacacaca |
9622133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 28944960 - 28944888
Alignment:
| Q |
21 |
tcaggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacaca |
93 |
Q |
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|||||||| |||| |||||||| | ||||| ||||| || |||||||| ||||| |||| |||||||||||| |
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| T |
28944960 |
tcaggtgggctgctattgcatcccagttacccggaagaacagacaatgagataaagaacttttggaacacaca |
28944888 |
T |
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