View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_10 (Length: 582)
Name: NF11915_high_10
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 404390 - 404702
Alignment:
| Q |
20 |
atctgtggacacacattttccttttacattgccctcacttaaaacacttctagctggatgtccagctcttagagatcttcaagcatctcatttatacttc |
119 |
Q |
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| T |
404390 |
atctgtggacacaaattttccttttacattgccctcacttaaaacacttctagctggatgtccagctcttagagatcttcaagcatctcatttatacttc |
404489 |
T |
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| Q |
120 |
ggcgaatctgttccttttgattttcaacaatttgaaagctcaagcttaaaaatgttgaatagagcag--atattaccctctattattgctattttccgat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
404490 |
ggcgaatctgttccttttgattttcaacaatttgaaagctcaagcttaaaaatgttgaatagagcagatatattaccctctattattgctattttccgat |
404589 |
T |
|
| Q |
218 |
gaaagcactttcaaatgtggaggggatgcgcatacaactatggaaggttcgtgtttgattatgatgcatgcccatagaatggaatgaaaaagagcaatgt |
317 |
Q |
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| T |
404590 |
gaaagcactttcaaatgtggaggggatgcgcatacaactatggaaggttcgtgtttgattatgatgcatgcccatagaatggaatgaaaaagagcaatgt |
404689 |
T |
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| Q |
318 |
gattatcatttgt |
330 |
Q |
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||||||||||||| |
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| T |
404690 |
gattatcatttgt |
404702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 433 - 571
Target Start/End: Original strand, 404788 - 404926
Alignment:
| Q |
433 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgag |
532 |
Q |
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| T |
404788 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaattagcaccaatatgag |
404887 |
T |
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| Q |
533 |
catgttgtgctattgtcactgagctaacaattgcttcat |
571 |
Q |
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| T |
404888 |
catgttgtgctattgtcactgagctaacaattgcttcat |
404926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 571
Target Start/End: Complemental strand, 973049 - 972907
Alignment:
| Q |
433 |
atcacaaatagaatgtttgtaatatttgcacggatatgagtttttaatacatgtcctatttgataacttttcattctttttcaa----ttagcaccaata |
528 |
Q |
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|||||||| |||| |||||||||||| |||| ||||||||||| || ||||||| ||||||| ||||||||||| | ||| || |||| ||||||| |
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| T |
973049 |
atcacaaacagaaagtttgtaatattagcacctatatgagttttgaaaacatgtcttatttgagaacttttcattatcttttaattagttaggaccaata |
972950 |
T |
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| Q |
529 |
tgagcatgttgtgctattgtcactgagctaacaattgcttcat |
571 |
Q |
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| T |
972949 |
cgagcatgttgtgttgttatcactgaggtaacaatttcttcat |
972907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 1399259 - 1399368
Alignment:
| Q |
157 |
gctcaagcttaaaaatgttgaatagagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtggaggggatgcgcatacaact |
256 |
Q |
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||||||||||||||| |||||| | ||||||||| ||| | || ||||||||||| | ||||| ||||||||||||||||| | ||||||||||| |
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| T |
1399259 |
gctcaagcttaaaaaggttgaacaaagcagatataaccgaccatgattgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaact |
1399358 |
T |
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| Q |
257 |
atggaaggtt |
266 |
Q |
| |
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||| |||||| |
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| T |
1399359 |
atgcaaggtt |
1399368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 965787 - 965722
Alignment:
| Q |
173 |
gttgaatagagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtgga |
238 |
Q |
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|||||| ||||||||||||||| || | | |||||||||||| ||||| ||||||||||| |||| |
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| T |
965787 |
gttgaacagagcagatattaccgactgtgaatgctattttccggtgaaatcactttcaaatttgga |
965722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 45810831 - 45810765
Alignment:
| Q |
173 |
gttgaatagagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag |
239 |
Q |
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|||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||| ||| ||||| |
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| T |
45810831 |
gttgaagagagctgatattactatctgttattgctattttccgatgaaagcactttcgaatttggag |
45810765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 10117355 - 10117296
Alignment:
| Q |
180 |
agagcagatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag |
239 |
Q |
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| T |
10117355 |
agagcatatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggag |
10117296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 1446212 - 1446175
Alignment:
| Q |
202 |
attgctattttccgatgaaagcactttcaaatgtggag |
239 |
Q |
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| T |
1446212 |
attgcgatgttccgatgaaagcactttcaaatgtggag |
1446175 |
T |
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