View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11915_high_11 (Length: 569)

Name: NF11915_high_11
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11915_high_11
NF11915_high_11
[»] chr2 (8 HSPs)
chr2 (8-569)||(7156181-7156753)
chr2 (138-196)||(7174503-7174561)
chr2 (17-66)||(7160752-7160801)
chr2 (17-61)||(6538843-6538887)
chr2 (8-66)||(7199967-7200025)
chr2 (152-197)||(7160901-7160946)
chr2 (17-66)||(7168688-7168737)
chr2 (8-64)||(7174362-7174418)
[»] chr6 (2 HSPs)
chr6 (137-198)||(9825635-9825696)
chr6 (137-198)||(9819955-9820016)
[»] chr3 (3 HSPs)
chr3 (17-66)||(2442043-2442092)
chr3 (17-66)||(4142132-4142181)
chr3 (17-66)||(4157942-4157991)
[»] chr5 (1 HSPs)
chr5 (18-66)||(11081817-11081865)


Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Original strand, 7156181 - 7156753
Alignment:
Q  8 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca-----------aagtatcaccatgacaaagtatgcacaaacaa 96  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  7156181 aggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatctgccaaagtatcaccatgacaaagtatgcacaaacaa 7156280  T
Q  97 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156281 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 7156380  T
Q  197 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156381 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatg 7156480  T
Q  297 ggtttgaatccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaacc 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7156481 ggtttgaatccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaact 7156580  T
Q  397 gcgaccaccttgtaagtatcactggaatgatcatatccaaagccatacattgtgaaataactaggcattcgagttggaggaacttctagatagggcgact 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7156581 gcgaccaccttgtaagtatcactggaatgatcatatccaaagccatacattgtgaaataactaggcgttcgagttggaggaacttctagatagggcgact 7156680  T
Q  497 ttgtaaatttgctaatggaagggttccacaaatttgatcgagtgcggaacagagaatgccatgtcaagaagca 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  7156681 ttgtaaatttgctaatggaagggttccacaaatttgatcgagtgcgaaacagagaatgccatggcaagaagca 7156753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
Q  138 tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 196  Q
    |||||||||||||||||||||||||| | |||||||  ||||||||| || ||||||||    
T  7174503 tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa 7174561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  17 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    ||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 6538887 - 6538843
Alignment:
Q  17 gaacaatttagcccaagaatcttcatttcgatactccttcataag 61  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  6538887 gaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7199967 - 7200025
Alignment:
Q  8 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    |||| ||| ||||||| |||||||||||| |||||||| | |||||||||||| |||||    
T  7199967 aggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaa 7200025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
Q  152 gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat 197  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||    
T  7160901 gcaatagctctcgataagactccttctccaaatcaagagaaacaat 7160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  17 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    ||||||||||| ||||||||| | ||||| ||| ||||||||||||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 7174362 - 7174418
Alignment:
Q  8 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca 64  Q
    |||| ||| ||||||| ||| ||||||||||| ||||| ||| ||||||||||||||    
T  7174362 aggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagcca 7174418  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
Q  137 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 198  Q
    ||||||||||||||||||| |||||| || | ||||| ||| ||||||||| ||||||||||    
T  9825635 ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg 9825696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
Q  137 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 198  Q
    ||||||||||||||||||| |||||| || | |||||  || ||||||||| ||||||||||    
T  9819955 ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg 9820016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 2442092 - 2442043
Alignment:
Q  17 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 4142132 - 4142181
Alignment:
Q  17 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4142132 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 4157942 - 4157991
Alignment:
Q  17 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  18 aacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 66  Q
    |||||||||| |||||| |||| ||||| |||||||||||||| |||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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