View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_14 (Length: 472)
Name: NF11915_high_14
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 244452 - 244011
Alignment:
| Q |
16 |
gaagaacgagaacgaccaaaagtacaaccttggagaggagcttcattatccatttccatcaacactttgtaaaagacatcaacattacaaggaagagcca |
115 |
Q |
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| T |
244452 |
gaagaacgagaacgaccaaaagtacaaccttggagaggagcttcattatccatttccatcaacactttgtaaaagacatcaacattacaaggaagagcca |
244353 |
T |
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| Q |
116 |
aaggtccttggcagctataaccatattctgattcagcttcttcaagcaacatcttgaacaaaggatgattagcatactcagttttgatcacaaacctttg |
215 |
Q |
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| T |
244352 |
aaggtccttggcagctataaccatattctgattcagcttcttcaagcaacatcttgaacaaaggatgattagcatactcagttttgatcacaaacctttg |
244253 |
T |
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| Q |
216 |
catttgaggtccaacgtacaccgaaaagcatccctccggggccactttctttcgtctattttcttcgccccgtggaagaccaggccatgatttgctcctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244252 |
catttgaggtccaacgtacaccgaaaagcatccctccggggccactttctttcgtctattttcttcgccccgtggaagaccaggccatgatttgctcctt |
244153 |
T |
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| Q |
316 |
cttgttgttggagtcactgatgatgaatatgatttactcttgtgtcctcctcctatggacttgcatctctcccacgtttttgtgatgaggcctattttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244152 |
cttgttgttggagtcactgatgatgaatatgatttactcttgtgtcctcctcctatggacttgcatctctcccacgtttttgtgatgaggcctattttct |
244053 |
T |
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| Q |
416 |
tgttcccttttccttgcttcatgttcttgccaatatccattt |
457 |
Q |
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| T |
244052 |
tgttcccttttccttgcttcatgttcttgccaatatccattt |
244011 |
T |
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