View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_16 (Length: 434)
Name: NF11915_high_16
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 40837671 - 40837261
Alignment:
| Q |
15 |
cataggtttgtagggagtagggacatcatattatatatacaggatcggccgatcagggttcgaaccctaaattcctcacttattcaccttatgcgtgaaa |
114 |
Q |
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| T |
40837671 |
cataggtttgtagggagtagggacatcatattatatatacaggatcggccgatcagggttcgaaccctaaattcctcacttattcaccttatgcgtgaaa |
40837572 |
T |
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| Q |
115 |
ttttagccaatatgctagtgaaaaaagtgtgttatgaaatatatctcctccaagtgtaatgaaatgtataatgaaagaatggaattttgctattttcaga |
214 |
Q |
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| T |
40837571 |
ttttagccaatatgctagtgaaaaaagtgtgatatgaaatatatctcctccaaatgtaatgaaatgtataatgaaagaatggaattttgctattttcaga |
40837472 |
T |
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| Q |
215 |
tgttggcttttcgcttaaaacccaagtcgaaagatgattaccggaaatattggaatatgtatcatcattttcttggatatggactactggctatcatagt |
314 |
Q |
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| T |
40837471 |
tgttggcttttcgcttaaaacccaagtcgacagatgattaccggaaatattggaatatgtatcatcattttcttggatatggactactggctatcatagt |
40837372 |
T |
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| Q |
315 |
tataaacatatttaaaggaattaacattttgcatgggggtagtaggtggaggtggagttacattggaattcttataggtttgggtaccattgcatttgct |
414 |
Q |
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| T |
40837371 |
cataaacatatttaaaggaattaacattttgcatgggggtagtagctggaggtggagttacattggaattcttataggtttgggtaccattgcatttgct |
40837272 |
T |
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| Q |
415 |
ttggagatttt |
425 |
Q |
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| T |
40837271 |
ttggagatttt |
40837261 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 13641129 - 13641166
Alignment:
| Q |
68 |
cagggttcgaaccctaaattcctcacttattcacctta |
105 |
Q |
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| T |
13641129 |
cagggtttgaaccctaaattccccacttattcacctta |
13641166 |
T |
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