View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11915_high_19 (Length: 412)
Name: NF11915_high_19
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_19 |
 | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 4 - 389
Target Start/End: Complemental strand, 54423920 - 54423537
Alignment:
| Q |
4 |
gaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54423920 |
gaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcg--tttctaaggtcctggtcaatcgtcttcgtccacttattaacaa |
54423823 |
T |
|
| Q |
104 |
atgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaaca |
203 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54423822 |
atggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaaca |
54423723 |
T |
|
| Q |
204 |
aaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggt |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54423722 |
aaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggt |
54423623 |
T |
|
| Q |
304 |
tcagttcacagtggacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccct |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
54423622 |
tcagttcacagtggacttcctggatgatgatgtgcatcacctccgttgaatatcacgtcattttcaacggcgaccgcattggccct |
54423537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 128 - 389
Target Start/End: Original strand, 20127319 - 20127580
Alignment:
| Q |
128 |
ctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
20127319 |
ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca |
20127418 |
T |
|
| Q |
228 |
ctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctgga |
327 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||||| |||| | ||||||||| | ||| | |||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
20127419 |
ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaatccattctccttaaaatgggtttcagttcacaatggacctcctgga |
20127518 |
T |
|
| Q |
328 |
tgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccct |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
20127519 |
tgatgatgtgcatcacctccgttgaataccacgtcatttttaatggtgaccgcattggccct |
20127580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 27645764 - 27645594
Alignment:
| Q |
117 |
gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag |
216 |
Q |
| |
|
||||||||||| || || || || ||||| |||||||||||||| |||| || || ||| | | |||||||||||||||||||| ||||| ||||| | |
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|
| T |
27645764 |
gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg |
27645665 |
T |
|
| Q |
217 |
gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctatt |
287 |
Q |
| |
|
||||||||||||| |||||||| || || ||||| || |||||||| | |||| |||||| ||||||||| |
|
|
| T |
27645664 |
gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctatt |
27645594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 20120928 - 20121056
Alignment:
| Q |
4 |
gaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaa |
103 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||| | |||||||| | | ||||||||||| | ||||||||| | |||| | || ||||| |
|
|
| T |
20120928 |
gaatccatgcgagaccttcggcctatttctctctgtaatgtactgtacaagattg--tctctaaggtccttgccaatcgtctccatccattaatcaacaa |
20121025 |
T |
|
| Q |
104 |
atgaattttccaagaacaggcagcctttgtg |
134 |
Q |
| |
|
||| |||| ||||||||| |||||||||||| |
|
|
| T |
20121026 |
atggatttcccaagaacaagcagcctttgtg |
20121056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 13190709 - 13190455
Alignment:
| Q |
135 |
cattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaac |
234 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||| ||| ||||||| |||||||| ||||| ||||| ||| ||||| | || ||| | |||| |
|
|
| T |
13190709 |
cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaagcacaaagggaaactaggtaacgtcgctatgaaac |
13190610 |
T |
|
| Q |
235 |
ttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgat |
334 |
Q |
| |
|
|||| ||||| || || || ||||| ||| ||||| |||||| |||||||| | ||| ||||| || ||||||| ||| || |||||| |||| |
|
|
| T |
13190609 |
ttgatatatcaaaagcttttgatagcataagctggtcatacctcgaagctattcttactaagatgggattttgttcacaatgggtctcttggatgttgat |
13190510 |
T |
|
| Q |
335 |
gcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccct |
389 |
Q |
| |
|
| |||||| || || ||||||||||| ||||| ||||| ||||| |||| |||| |
|
|
| T |
13190509 |
gtgcatcatgtctgtcgaatatcacgttattttcaacggtgaccgaattgaccct |
13190455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
| Q |
186 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
262 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
|
|
| T |
12461121 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
12461045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 287
Target Start/End: Original strand, 44137419 - 44137619
Alignment:
| Q |
87 |
cgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatc |
186 |
Q |
| |
|
||||| || ||||||||||| || | | ||||||| | |||||||| || ||||| || ||||||||||| || ||||| |||| || ||| || | |
|
|
| T |
44137419 |
cgtcctctcattaacaaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacaacatttgagactctccacc |
44137518 |
T |
|
| Q |
187 |
atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctat |
286 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| || ||| | || | ||||| || ||||| || || ||||||| |||||| ||||| ||||||| |
|
|
| T |
44137519 |
atatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaagttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctat |
44137618 |
T |
|
| Q |
287 |
t |
287 |
Q |
| |
|
| |
|
|
| T |
44137619 |
t |
44137619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 262
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
| Q |
123 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
222 |
Q |
| |
|
||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| | ||||||||| |||||| | |
|
|
| T |
9183133 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
9183034 |
T |
|
| Q |
223 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
262 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
9183033 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
9182994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
| Q |
123 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
222 |
Q |
| |
|
||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| | || ||| ||||||||||||| | |||||||||| |||||| | |
|
|
| T |
11625140 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg |
11625239 |
T |
|
| Q |
223 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
262 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
11625240 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
11625279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 262
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
| Q |
123 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
222 |
Q |
| |
|
||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| | ||||||||| |||||| | |
|
|
| T |
10161356 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
10161257 |
T |
|
| Q |
223 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
262 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
10161256 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
10161217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
| Q |
186 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
262 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || ||||| |
|
|
| T |
16860983 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt |
16861059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 21741103 - 21740989
Alignment:
| Q |
129 |
tttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctc |
228 |
Q |
| |
|
||||| ||||||| ||| || ||||| ||||| || | |||| |||| |||||||||||||||| || ||| | ||||| || | ||||||||||||| |
|
|
| T |
21741103 |
tttgtccattctctctccattatggacaatgctctgatggcatacgaaattcttcatcatatgcgttgtaaatcgaaagggaagaaaggtgaggtggctt |
21741004 |
T |
|
| Q |
229 |
tcaaacttgacatat |
243 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
21741003 |
tgaaacttgatatat |
21740989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
| Q |
186 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
262 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
|
|
| T |
2013 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
1937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 250
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
| Q |
123 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
222 |
Q |
| |
|
||||||||||| | ||| | || |||||||||||||| ||| |||| || ||| ||||||| |||||| ||||| | |||||| ||||| || |||| |
|
|
| T |
239092 |
gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg |
238993 |
T |
|
| Q |
223 |
tggctctcaaacttgacatatccaaggc |
250 |
Q |
| |
|
||||| | || ||||| ||||||||||| |
|
|
| T |
238992 |
tggctttaaagcttgatatatccaaggc |
238965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 51142295 - 51142253
Alignment:
| Q |
322 |
cctggatgatgatgcgcatcacctccgttgaatatcacgtcat |
364 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
51142295 |
cctggatgatgatgtgcatcacctcagttgaatatcatgtcat |
51142253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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