View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11915_high_26 (Length: 346)

Name: NF11915_high_26
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11915_high_26
NF11915_high_26
[»] chr1 (11 HSPs)
chr1 (17-124)||(41988093-41988200)
chr1 (176-294)||(41987921-41988039)
chr1 (176-293)||(41985205-41985322)
chr1 (176-244)||(5031741-5031809)
chr1 (176-244)||(17983263-17983331)
chr1 (176-244)||(20607553-20607621)
chr1 (176-249)||(3820306-3820379)
chr1 (176-244)||(5757802-5757870)
chr1 (176-247)||(6073242-6073313)
chr1 (176-247)||(20610821-20610892)
chr1 (291-335)||(41987842-41987886)
[»] chr3 (10 HSPs)
chr3 (176-254)||(31604690-31604768)
chr3 (176-250)||(52044098-52044172)
chr3 (176-244)||(27481708-27481776)
chr3 (176-244)||(39623993-39624061)
chr3 (176-244)||(41665431-41665499)
chr3 (176-244)||(48394383-48394451)
chr3 (176-247)||(39918624-39918695)
chr3 (176-244)||(47667108-47667176)
chr3 (176-247)||(48402436-48402507)
chr3 (185-232)||(48413993-48414040)
[»] chr8 (6 HSPs)
chr8 (176-244)||(43731584-43731652)
chr8 (176-244)||(43748330-43748398)
chr8 (176-244)||(9944023-9944091)
chr8 (176-244)||(18364536-18364604)
chr8 (176-244)||(27547177-27547245)
chr8 (176-244)||(35929249-35929317)
[»] chr7 (7 HSPs)
chr7 (176-244)||(28040454-28040522)
chr7 (176-244)||(33171127-33171195)
chr7 (176-244)||(44206101-44206169)
chr7 (176-244)||(23260679-23260747)
chr7 (176-244)||(31516564-31516632)
chr7 (176-244)||(38538913-38538981)
chr7 (176-244)||(39796752-39796820)
[»] chr5 (4 HSPs)
chr5 (176-244)||(32684987-32685055)
chr5 (176-244)||(8880747-8880815)
chr5 (176-244)||(20190346-20190414)
chr5 (176-253)||(20200374-20200451)
[»] chr2 (4 HSPs)
chr2 (176-244)||(27282663-27282731)
chr2 (176-244)||(36047052-36047120)
chr2 (176-244)||(36048283-36048351)
chr2 (176-244)||(44206823-44206891)
[»] chr4 (1 HSPs)
chr4 (176-244)||(24267487-24267555)
[»] scaffold0012 (1 HSPs)
scaffold0012 (186-247)||(184933-184994)
[»] chr6 (1 HSPs)
chr6 (198-230)||(30899737-30899769)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 41988200 - 41988093
Alignment:
Q  17 caaaattctcacgtatattgtaatcctttacaatcttcaatttgctatgaagatccatatgttcaccaaaaggttgttttaagttgttgaggagctcatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41988200 caaaattctcacgtatattgtaatcctttacaatcttcaatttgctatgaagatccatatgttcaccaaaaggttgttttaagttgttgaggagctcatt 41988101  T
Q  117 tgttagac 124  Q
    | ||||||    
T  41988100 tcttagac 41988093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 294
Target Start/End: Complemental strand, 41988039 - 41987921
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgttaacatttcaattcaagatcatt 275  Q
    ||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  41988039 cgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgaccttgttgacatttcaattcaagatcatt 41987940  T
Q  276 gtattgaatcttatttatt 294  Q
    |||||||||||||||||||    
T  41987939 gtattgaatcttatttatt 41987921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 41985322 - 41985205
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgttaacatttcaattcaagatcatt 275  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||   |||||||||||||    
T  41985322 cgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgaccttgttaagattcttattcaagatcatt 41985223  T
Q  276 gtattgaatcttatttat 293  Q
     |||||||||||||||||    
T  41985222 ctattgaatcttatttat 41985205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 5031809 - 5031741
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5031809 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 5031741  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 17983331 - 17983263
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17983331 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 17983263  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 20607621 - 20607553
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 20607553  T

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Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 3820306 - 3820379
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaacct 249  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  3820306 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacct 3820379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 5757870 - 5757802
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 5757802  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 6073242 - 6073313
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 247  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaacaac 6073313  T

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Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 20610892 - 20610821
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 247  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaac 20610821  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 41987886 - 41987842
Alignment:
Q  291 tattaatcaattcttttggccaagacttttatatcatgtcttctt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41987886 tattaatcaattcttttggccaagacttttatatcatgtcttctt 41987842  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 31604768 - 31604690
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgtta 254  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  31604768 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttgtta 31604690  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 52044172 - 52044098
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaacctt 250  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  52044172 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacctt 52044098  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 27481708 - 27481776
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  27481708 cgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaac 27481776  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 39623993 - 39624061
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39623993 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 39624061  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 41665431 - 41665499
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41665431 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 41665499  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 48394383 - 48394451
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48394383 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 48394451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 39918624 - 39918695
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 247  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaac 39918695  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 47667108 - 47667176
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  47667108 cgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaac 47667176  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 48402436 - 48402507
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 247  Q
    ||||| |||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 48402507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  185 cggggatcgaacccgggtcacccgcgtgacagacgggaatacttacca 232  Q
    |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 43731584 - 43731652
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43731584 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 43731652  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 43748330 - 43748398
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 43748398  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 9944023 - 9944091
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9944023 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 9944091  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 18364604 - 18364536
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18364604 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 18364536  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 27547245 - 27547177
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27547245 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 27547177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 35929317 - 35929249
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35929317 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 35929249  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 28040454 - 28040522
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 28040522  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 33171195 - 33171127
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 33171127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 44206169 - 44206101
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 44206101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 23260747 - 23260679
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23260747 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 23260679  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 31516632 - 31516564
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31516632 cgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 31516564  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 38538981 - 38538913
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 38538913  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 39796752 - 39796820
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39796752 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 39796820  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 32685055 - 32684987
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 32684987  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 8880815 - 8880747
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8880815 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 8880747  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 20190346 - 20190414
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaac 20190414  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 20200374 - 20200451
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgtt 253  Q
    |||||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||| || |||||    
T  20200374 cgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgactttgtt 20200451  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 27282663 - 27282731
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27282663 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 27282731  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 36047120 - 36047052
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36047120 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 36047052  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 36048351 - 36048283
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36048351 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 36048283  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 44206891 - 44206823
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 44206823  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 24267487 - 24267555
Alignment:
Q  176 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 244  Q
    ||||| ||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaac 24267555  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 184994 - 184933
Alignment:
Q  186 ggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 247  Q
    |||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||||||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaac 184933  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  198 cgggtcacccgcgtgacagacgggaatacttac 230  Q
    ||||||||||||||||||| |||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

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