View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_28 (Length: 299)
Name: NF11915_high_28
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 72 - 285
Target Start/End: Complemental strand, 2720682 - 2720470
Alignment:
| Q |
72 |
acctgaaattgcattgactccattaagacatgttcgaaagaaagatattgcatttttgtttgaaggatgagaggctatgactttctcctcatcatctctg |
171 |
Q |
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| T |
2720682 |
acctgaaattgcattgactccattaagacatgttcgaaagaaagatattgcatttttgtttgaaggatgagaggctatgactttctcctcatcatctctg |
2720583 |
T |
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| Q |
172 |
aaatgtcctaacttccacttagatagtaaaggcacctttaaggttaagttgttgtgatgtttttcagacatagtacaaaagnnnnnnnngctagaattgt |
271 |
Q |
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| T |
2720582 |
aaatgtcctaacttccacttagatagtaaaggcacctttaaggttaagttgttgtgatgttttccagacatagtacaaaag-aaaaaaagctagaattgt |
2720484 |
T |
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| Q |
272 |
tgatggaaaaaact |
285 |
Q |
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|||||||||||||| |
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| T |
2720483 |
tgatggaaaaaact |
2720470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 2698451 - 2698620
Alignment:
| Q |
70 |
aaacctgaaattgcattgactccattaagacatgttcgaaagaaagatattgcatttttgtttgaaggatgagaggctatgactttctcctcatcatctc |
169 |
Q |
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||||||||||||||||||| |||||||| |||||| |||||||||||| || ||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
2698451 |
aaacctgaaattgcattgagtccattaacacatgtatgaaagaaagatactgtatttttgtttgaaggatgagaaacaatgactttctcttcatca---a |
2698547 |
T |
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| Q |
170 |
tgaaatgtcctaacttccacttagatagtaaaggcacctttaaggttaagttgttgtgatgtttttcagacat |
242 |
Q |
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| T |
2698548 |
tggaatgtcctaacttccactcagatagtaaaggaacatttaagggtgagttgttgagaactttttctgacat |
2698620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 10839851 - 10840024
Alignment:
| Q |
70 |
aaacctgaaattgcattgactccattaagacatgttcgaaagaaagatattgcatttttgtttgaaggatgagaggctatgactttctcctcatcatctc |
169 |
Q |
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|||||||||||||||||| |||| |||| |||||| ||||||||||||| | | ||||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
10839851 |
aaacctgaaattgcattggctcctttaacacatgtgcgaaagaaagatacagtacttttgtttggagaatgagaggcaatgactttctcctcatcatcta |
10839950 |
T |
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| Q |
170 |
tgaaatgtcctaacttccacttagatagtaaaggcacctttaaggttaagttgttgtgatgtttttcagacata |
243 |
Q |
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|| ||||| ||| ||||||| ||||||||||||||| ||||||||| |||| ||| || | |||||||||||| |
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| T |
10839951 |
tggaatgttttaaattccactcagatagtaaaggcacatttaaggttgagtttttgagaagcttttcagacata |
10840024 |
T |
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