View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_3 (Length: 872)
Name: NF11915_high_3
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 323 - 678
Target Start/End: Original strand, 44767213 - 44767569
Alignment:
| Q |
323 |
atttgtagatttgttttgcataagattcatggttaagtttgggagatcacaannnnnnnnngatctaccccgaggttttctttgacacttgttttgtatg |
422 |
Q |
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| T |
44767213 |
atttgtagatttgttttgcataagattcatggctaagtttgggagaccacaatttttttttggtctaccccgaggttttctttgacatttgttttgtatg |
44767312 |
T |
|
| Q |
423 |
cccttctcctcgataatgttaagaggtccttcagtgttggatacatctagtcgtagttgtgca-aatgtgatggtgttttaatccttgatttaagtcgct |
521 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
44767313 |
cccttctcctcgataatgttaagaggtccttcgctgttggatacatctggttgtagttgtacagaatgtgatggtgtttcaatccttgatttaagtcgct |
44767412 |
T |
|
| Q |
522 |
ttgaggaatttttgggaagctgttgaaaaaactgttggatttttaacggtaatcaattnnnnnnnnnnnnnnnnnnnnnnnnntggacttttagataaat |
621 |
Q |
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| T |
44767413 |
ttgaggaatttttgggaagttgttgaaaaaactgttggatttttaacggtaatcaattttaaaaaaaataaataaaataaaattggacttttagataaat |
44767512 |
T |
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| Q |
622 |
tttgaatttggtggtttcttctgaggattcttttcaaatttgattctttatttaaat |
678 |
Q |
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| T |
44767513 |
tttgaatttggtggtttcttgtgaggattcttttcaaatttgattctttatttaaat |
44767569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 323 - 546
Target Start/End: Original strand, 44766681 - 44766905
Alignment:
| Q |
323 |
atttgtagatttgttttgcataagattcatggttaagtttgggagatcacaannnnnnnnngatctaccccgaggttttctttgacacttgttttgtatg |
422 |
Q |
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| T |
44766681 |
atttgtagatttgttttgcataagattcatggctaagtttgggagaccacaatttttttttggtctaccccgaggttttctttgacatttgttttgtatg |
44766780 |
T |
|
| Q |
423 |
cccttctcctcgataatgttaagaggtccttcagtgttggatacatctagtcgtagttgtgca-aatgtgatggtgttttaatccttgatttaagtcgct |
521 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| || |||||||||||| |||||||||||||||| ||| |
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| T |
44766781 |
cccttctcctcgataatgttaagaggtccttcggtgttggatacatctgttcgctcttgtgcagaaggtgatggtgtttcaatccttgatttaagttgct |
44766880 |
T |
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| Q |
522 |
ttgaggaatttttgggaagctgttg |
546 |
Q |
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| T |
44766881 |
ttgaggaatttttgggaagctgttg |
44766905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 323 - 546
Target Start/End: Original strand, 44766149 - 44766373
Alignment:
| Q |
323 |
atttgtagatttgttttgcataagattcatggttaagtttgggagatcacaannnnnnnnngatctaccccgaggttttctttgacacttgttttgtatg |
422 |
Q |
| |
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|||| ||||| | |||||||||| |||||||| ||||||||| ||| ||||| | ||| ||||||||||||||||||||||||||||||||| |
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| T |
44766149 |
atttatagatgtattttgcataatattcatggctaagtttggaagaccacaatctttttttggtctgccccgaggttttctttgacacttgttttgtatg |
44766248 |
T |
|
| Q |
423 |
cccttctcctcgataatgttaagaggtccttcagtgttggatacatctagtcgtagttgtgca-aatgtgatggtgttttaatccttgatttaagtcgct |
521 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||| || |||||||||||| |||||||||||||||| ||| |
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| T |
44766249 |
cccttcttctcgataatgttaagaggtccttcggtgttggatacatctgttcgctcttgtgcagaaggtgatggtgtttcaatccttgatttaagttgct |
44766348 |
T |
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| Q |
522 |
ttgaggaatttttgggaagctgttg |
546 |
Q |
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| T |
44766349 |
ttgaggaatttttgggaagctgttg |
44766373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 44766490 - 44766615
Alignment:
| Q |
201 |
gttagtatttaaaaaatactttgattcaatgacatataaaaaattatgagatggattatatcataaaacatagtatgatttgagttgtaagttttaatat |
300 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
44766490 |
gttagaatttaaaaattactttgattcaatgacatacaaaaaattatgagatggattatatcaacaaccatagtatgatttgagttgtaagttttaatat |
44766589 |
T |
|
| Q |
301 |
taccttcatcaatcctagaatcattt |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
44766590 |
taccttcatcaatcctagaatcattt |
44766615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 44767022 - 44767147
Alignment:
| Q |
201 |
gttagtatttaaaaaatactttgattcaatgacatataaaaaattatgagatggattatatcataaaacatagtatgatttgagttgtaagttttaatat |
300 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
44767022 |
gttagaatttaaaaattactttgattcaatgacatacaaaaaattatgagatggattatatcaacaaccatagtatgatttgagttgtaagttttaatat |
44767121 |
T |
|
| Q |
301 |
taccttcatcaatcctagaatcattt |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
44767122 |
taccttcatcaatcctagaatcattt |
44767147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 808 - 854
Target Start/End: Original strand, 44767734 - 44767780
Alignment:
| Q |
808 |
aaaacattgatgatagtgagattgatacttaacgcggaaagcaagtt |
854 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44767734 |
aaaacattgatgatagtgagattgatacttaacgcggaaagcaagtt |
44767780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 752 - 809
Target Start/End: Original strand, 44767648 - 44767705
Alignment:
| Q |
752 |
tcagttttggcatgtatacacattgacacatacctcatatttgaatttttctggataa |
809 |
Q |
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| T |
44767648 |
tcagttttagcatgtatacagattgacacatacctcatatttgaattgttctggataa |
44767705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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