View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_42 (Length: 219)
Name: NF11915_high_42
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 54423923 - 54424127
Alignment:
| Q |
10 |
gattatcaccctttggtgcaagcactatgtttgtagcatttaaatctgggg-tagataactcgaag--------ctaaccaagactaggcagaagagaat |
100 |
Q |
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| T |
54423923 |
gattatcaccctttggtgcaagcactatgtttgtagcatttaaatctgggggtagataactcgaagtctcaaagctaaccaagacgaggcagaagagaat |
54424022 |
T |
|
| Q |
101 |
atttcatccccgatatcttcccaaaatctg-ggtagaaagccgggttaaggctgtctggcccaggtgatttatcgggatgcatgttaaaaatagcttcct |
199 |
Q |
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| T |
54424023 |
atttcatcaccgatatctttccaaaatctgtggtagaaaatcgggttaaggccgtctggcccaggtgatttatccgaatgcatgttaaaaatagcttcct |
54424122 |
T |
|
| Q |
200 |
tgaat |
204 |
Q |
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||||| |
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| T |
54424123 |
tgaat |
54424127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 20120927 - 20120729
Alignment:
| Q |
8 |
cggattatcaccctttggtgcaagcactatgtttgtagcatttaaatctggggt-agataactcgaagctaaccaagactaggcagaagagaatatttca |
106 |
Q |
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|||||| || |||||||| || || |||||||||||| ||||||| ||||||| ||| || | ||||| ||||||||| ||||| ||||||| ||||| |
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| T |
20120927 |
cggattgtctccctttggagcgagaactatgtttgtaacatttaattctgggggcagagaagttgaagccaaccaagacaaggcaaaagagaaaatttcg |
20120828 |
T |
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| Q |
107 |
tccccgatatcttcccaaaatctg-ggtagaaagccgggttaaggctgtctggcccaggtgatttatcgggatgcatgttaaaaatagcttccttgaat |
204 |
Q |
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| T |
20120827 |
tccccaatgtcctcccaaaacctatggtagaaagccgggttaaggccgtctgggcccggggatttatccggatgcatgttgaaaatggcttccttgaat |
20120729 |
T |
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