View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11915_high_43 (Length: 213)
Name: NF11915_high_43
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_43 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 33155406 - 33155224
Alignment:
| Q |
14 |
gagcagagatttggtgaagacattggagatttcggcacaaaatttggctatcttaagttttcaaattacaataactacacaaaacattccaaatcagagg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33155406 |
gagcagagatttggtgaagacattggagatttcggcacagaattgggctatcttaagttttcgaattacaataactacacaaaacattccaaatcagagg |
33155307 |
T |
|
| Q |
114 |
aaaatttgttgaacaaggtttggcatcaaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttt |
196 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33155306 |
aaaatttgttgaacaaggtttggtatcaaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttt |
33155224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 33171096 - 33170914
Alignment:
| Q |
14 |
gagcagagatttggtgaagacattggagatttcggcacaaaatttggctatcttaagttttcaaattacaataactacacaaaacattccaaatcagagg |
113 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
33171096 |
gagcagaggtttggtgaagacaaaggagatttcagcacagaattgggctatcttaagtttgccaattacaataactacacaaaacattacaaattagagg |
33170997 |
T |
|
| Q |
114 |
aaaatttgttgaacaaggtttggcatcaaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttt |
196 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
33170996 |
ataatctgttgaacaaggtttggtatcaaccagagagaatttttcctattgatggaactcctgaagtttggcagcctgctttt |
33170914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 33145235 - 33145093
Alignment:
| Q |
40 |
agatttcggcacaaaatttggctatcttaagttttcaaattacaataactacacaaaacattccaaatcagaggaaaatttgttgaacaaggtttggcat |
139 |
Q |
| |
|
||||||| ||| | ||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||| | |||| |||||||||| || |
|
|
| T |
33145235 |
agatttcagcaaagaatttggttatcttaagttttccaattacaataactacacaaagcattcaaaatcagtggaaaatcttttgagcaaggtttggtat |
33145136 |
T |
|
| Q |
140 |
caaccagagagaatttttcctgttgatggaactcctgaagttt |
182 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
33145135 |
caaccagaggaaatttttcctgtggatggaacacctgaagttt |
33145093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University