View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_high_7 (Length: 620)
Name: NF11915_high_7
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 21 - 608
Target Start/End: Original strand, 52459105 - 52459692
Alignment:
| Q |
21 |
agtttgtgttgtgctagtttgcgtaatcctattttgtcttgatgggnnnnnnnnnnnnnnnnctgtcacaggtttggtgatacctgagctattttcagtt |
120 |
Q |
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| T |
52459105 |
agtttgtgctgtgctagtttgcgtaatcctattttgtcttgatgggttttttgttttcttttctgtcacaggtttggtgatacctgagctattttcagtt |
52459204 |
T |
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| Q |
121 |
taggtccttcattccttcgaaatctggacactttaatgagcttgtggcagcggttagagacaacattgaactatgaagaagctattctttttcagatcat |
220 |
Q |
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| T |
52459205 |
taggtccttcattccttcgaaatctggacactttaatgagcttgtggcagcggttagagacaacactgaactatgaagaagctattctttttcagatcat |
52459304 |
T |
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| Q |
221 |
ctgcatctagcggtggaagcaataattcggctcctccaaagtcaactaatgagcaattgtcttgggaggttttttcagatagtggagtgaataatcaagg |
320 |
Q |
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| T |
52459305 |
ctgcatctagcggtggaagcaataattcggctcctccaaagtcaactaatgagcaattgtcttgggaggttttttcagatagtggagtgaataatcaagc |
52459404 |
T |
|
| Q |
321 |
tcatggcaaaattgaggacaagggcttcttctccaaatctagaaagcaagttgctgataaccacagttcaagtgctggtccaaaccttagaaggagcagg |
420 |
Q |
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| T |
52459405 |
tcatggcaaaattgaggacaagggcttcttctccaaatctagaaagcaagttgctgataaccaaagttcaagtgctggtccaaaccttagaaggagcagg |
52459504 |
T |
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| Q |
421 |
tcaatgtcctcggcttccttccaggtcaaagatccaactagatctcctacaagtagcattgctagtgatccgtatcatcaatttgagcattcgttggggt |
520 |
Q |
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| T |
52459505 |
tcaatgtcctcggcttccttccaggtcaaagatccaactagatctcctacaagtagcattgctagtgatccgtatcatcaatttgagcattcgttggggt |
52459604 |
T |
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| Q |
521 |
aagacccgataatctaactttgaaactgatgtttataataccttgtattagttacattttgcacatattaactttggctgtactttct |
608 |
Q |
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| T |
52459605 |
aagacccgataatctaactttgaaactgatgtttataataccttgtattagttacattttgcacatattaactttggctgtactttct |
52459692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 467
Target Start/End: Complemental strand, 1288233 - 1288161
Alignment:
| Q |
395 |
ctggtccaaaccttagaaggagcaggtcaatgtcctcggcttccttccaggtcaaagatccaactagatctcc |
467 |
Q |
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| T |
1288233 |
ctggtccaaacctaagacggagctggtcaatctcctcggcttccttccaggtcaaagatccaactagatctcc |
1288161 |
T |
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