View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11915_low_10 (Length: 602)

Name: NF11915_low_10
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11915_low_10
NF11915_low_10
[»] chr2 (22 HSPs)
chr2 (17-583)||(8403626-8404189)
chr2 (22-212)||(8429486-8429676)
chr2 (24-128)||(8376193-8376297)
chr2 (168-247)||(8368104-8368183)
chr2 (168-247)||(8401227-8401306)
chr2 (168-247)||(8422804-8422883)
chr2 (182-236)||(8411867-8411921)
chr2 (182-236)||(8433965-8434019)
chr2 (182-234)||(8376087-8376139)
chr2 (24-128)||(8395879-8395983)
chr2 (24-128)||(8405589-8405693)
chr2 (182-234)||(8431018-8431070)
chr2 (53-128)||(8430889-8430964)
chr2 (191-250)||(8459649-8459708)
chr2 (186-235)||(8416952-8417001)
chr2 (24-128)||(8411709-8411813)
chr2 (24-128)||(8433807-8433911)
chr2 (53-128)||(8416822-8416897)
chr2 (182-232)||(8405747-8405797)
chr2 (378-414)||(8368314-8368350)
chr2 (378-414)||(8401060-8401096)
chr2 (378-414)||(8422637-8422673)
[»] chr4 (2 HSPs)
chr4 (54-227)||(55335978-55336151)
chr4 (24-228)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (24-128)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 583
Target Start/End: Original strand, 8403626 - 8404189
Alignment:
Q  17 gacatcagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattc 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8403626 gacatcagattttgaggcaagctctctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattc 8403725  T
Q  117 aaatctttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctc 216  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403726 aaatctttctcttcaataatttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctc 8403825  T
Q  217 catgctcaaaagtattaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgatcctatagctgc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8403826 catgctcaaaagtattaacaacagttgccaaagcaccggaaaaagcaggaacaaaatttaccaacatttcatcacctacaaatgatgaccctatagctgc 8403925  T
Q  317 aattcctgttaacaaaggtccaaaaattgctaaacccttgttaatctttgatgcaatattccctaatctctcataatcctcaatatcttttctcttcacc 416  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403926 aattcctgttaacaaaggtcctaaaattgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcacc 8404025  T
Q  417 acttcaattacctcattcatttcatcttccaattccaaattccacccattattgctctcattattaatctccatcttattgttcaatccagtaattttct 516  Q
    |||||||||||||| |||||||||| |||||| ||||||||||| |||||||| | |||   |||||||||||||||| ||||| ||| ||| |||||||    
T  8404026 acttcaattacctccttcatttcattttccaactccaaattccatccattattcccctc---attaatctccatcttactgttctatctagtcattttct 8404122  T
Q  517 ttggacatggccaccacctagatgcttcaaatttggaaggaaatttcgcaatcattgcacctcctaa 583  Q
    || |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  8404123 tttgacatggccaccacatagatgcttcaaatttggatggaaatttctcaatcattgcacctcctaa 8404189  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 8429486 - 8429676
Alignment:
Q  22 cagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatc 121  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||||  || ||||||||||| |||||||| || || ||||||||||||||||||||    
T  8429486 cagatttcgaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttcaaacacttccccgttttctcttttattcaaatc 8429585  T
Q  122 tttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgt 212  Q
    ||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  8429586 tttatcttcaatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctatacatctgaaacatcataccaacttgt 8429676  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 8376297 - 8376193
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8376297 gattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8376198  T
Q  124 tctct 128  Q
    |||||    
T  8376197 tctct 8376193  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 8368104 - 8368183
Alignment:
Q  168 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 247  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8368104 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8368183  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 8401306 - 8401227
Alignment:
Q  168 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 247  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8401306 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8401227  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 8422883 - 8422804
Alignment:
Q  168 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 247  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8422883 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 8422804  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 8411867 - 8411921
Alignment:
Q  182 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 236  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8411921  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 8433965 - 8434019
Alignment:
Q  182 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaaca 236  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaaca 8434019  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 8376139 - 8376087
Alignment:
Q  182 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 234  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8376087  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 8395983 - 8395879
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8395983 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8395884  T
Q  124 tctct 128  Q
    |||||    
T  8395883 tctct 8395879  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8405589 - 8405693
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8405589 gattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8405688  T
Q  124 tctct 128  Q
    |||||    
T  8405689 tctct 8405693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 8431018 - 8431070
Alignment:
Q  182 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaa 234  Q
    ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8431070  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 8459708 - 8459649
Alignment:
Q  191 ctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaaagc 250  Q
    |||||| |||||||||||||| |||||||| || || || ||||||||||||||||||||    
T  8459708 ctcaaaaaccataccaacttgccctccatgttctaatgtgttaacaacagttgccaaagc 8459649  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 8416952 - 8417001
Alignment:
Q  186 tacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaac 235  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaac 8417001  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8411709 - 8411813
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8411709 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8411808  T
Q  124 tctct 128  Q
    |||||    
T  8411809 tctct 8411813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8433807 - 8433911
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8433807 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8433906  T
Q  124 tctct 128  Q
    |||||    
T  8433907 tctct 8433911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 8405747 - 8405797
Alignment:
Q  182 tctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtatt 232  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtatt 8405797  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 8368314 - 8368350
Alignment:
Q  378 cctaatctctcataatcctcaatatcttttctcttca 414  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8368314 cctaatctctcataatcttccatatcttttctcttca 8368350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 8401096 - 8401060
Alignment:
Q  378 cctaatctctcataatcctcaatatcttttctcttca 414  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8401096 cctaatctctcataatcttccatatcttttctcttca 8401060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 8422673 - 8422637
Alignment:
Q  378 cctaatctctcataatcctcaatatcttttctcttca 414  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8422673 cctaatctctcataatcttccatatcttttctcttca 8422637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 55335978 - 55336151
Alignment:
Q  54 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 153  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  154 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 227  Q
    | || | || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 55336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 55330516 - 55330720
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| |||||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  124 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctc 223  Q
    ||||||| |  ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| ||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttc 55330715  T
Q  224 aaaag 228  Q
    |||||    
T  55330716 aaaag 55330720  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 129 - 25
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  129 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 30  T
Q  124 tctct 128  Q
    |||||    
T  29 tctct 25  T

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