View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11915_low_13 (Length: 538)

Name: NF11915_low_13
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11915_low_13
NF11915_low_13
[»] chr8 (4 HSPs)
chr8 (20-520)||(9444007-9444506)
chr8 (20-435)||(9439372-9439786)
chr8 (362-418)||(4799315-4799371)
chr8 (363-436)||(4844870-4844943)
[»] chr4 (15 HSPs)
chr4 (20-520)||(42265806-42266305)
chr4 (20-437)||(42270525-42270941)
chr4 (96-520)||(48701736-48702159)
chr4 (138-520)||(30950098-30950481)
chr4 (96-429)||(24520031-24520363)
chr4 (96-435)||(48697131-48697470)
chr4 (138-436)||(30945476-30945775)
chr4 (144-435)||(10427315-10427597)
chr4 (227-422)||(48782850-48783031)
chr4 (183-311)||(1979253-1979375)
chr4 (284-382)||(17248015-17248112)
chr4 (356-433)||(36615361-36615438)
chr4 (356-424)||(30165900-30165968)
chr4 (331-369)||(1979567-1979604)
chr4 (415-456)||(1999189-1999230)
[»] chr3 (11 HSPs)
chr3 (96-520)||(5823190-5823613)
chr3 (96-435)||(5818513-5818851)
chr3 (20-435)||(54545767-54546200)
chr3 (96-520)||(2817178-2817589)
chr3 (282-435)||(24659136-24659287)
chr3 (321-427)||(4579254-4579360)
chr3 (249-421)||(31204781-31204950)
chr3 (144-282)||(24671173-24671301)
chr3 (240-397)||(35977103-35977258)
chr3 (391-447)||(25877086-25877142)
chr3 (144-269)||(4579126-4579241)
[»] chr5 (5 HSPs)
chr5 (96-520)||(41718389-41718812)
chr5 (62-435)||(34359900-34360273)
chr5 (96-435)||(41723115-41723453)
chr5 (96-435)||(29585300-29585639)
chr5 (62-416)||(34352192-34352546)
[»] chr6 (10 HSPs)
chr6 (20-435)||(27873990-27874404)
chr6 (138-520)||(27878624-27879008)
chr6 (96-435)||(1234680-1235018)
chr6 (96-435)||(26976131-26976469)
chr6 (144-435)||(18967912-18968194)
chr6 (160-436)||(30986552-30986830)
chr6 (147-389)||(30966683-30966923)
chr6 (384-520)||(30967674-30967810)
chr6 (244-430)||(21966677-21966860)
chr6 (267-520)||(23012415-23012667)
[»] chr2 (15 HSPs)
chr2 (96-426)||(5198664-5198993)
chr2 (272-520)||(825632-825881)
chr2 (146-513)||(15602905-15603272)
chr2 (272-435)||(830288-830452)
chr2 (168-428)||(28715816-28716070)
chr2 (144-426)||(30396920-30397191)
chr2 (215-513)||(13843719-13844014)
chr2 (138-222)||(830205-830291)
chr2 (275-435)||(31592910-31593068)
chr2 (138-222)||(825549-825635)
chr2 (213-435)||(13840240-13840456)
chr2 (213-340)||(8004167-8004292)
chr2 (300-415)||(12175768-12175881)
chr2 (371-420)||(9358158-9358207)
chr2 (265-374)||(42117769-42117876)
[»] chr7 (7 HSPs)
chr7 (144-430)||(16183636-16183913)
chr7 (138-435)||(30235038-30235339)
chr7 (213-459)||(8139940-8140183)
chr7 (249-515)||(8138384-8138645)
chr7 (432-520)||(25441073-25441161)
chr7 (277-422)||(5102606-5102749)
chr7 (320-435)||(36528415-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (144-435)||(27226-27508)
[»] chr1 (4 HSPs)
chr1 (144-435)||(46191266-46191546)
chr1 (249-430)||(30697120-30697300)
chr1 (249-435)||(4130215-4130401)
chr1 (213-293)||(30674787-30674865)


Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 520
Target Start/End: Complemental strand, 9444506 - 9444007
Alignment:
Q  20 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444506 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 9444407  T
Q  120 gaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattct 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  9444406 gaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattct 9444308  T
Q  220 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 319  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444307 cctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 9444208  T
Q  320 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444207 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 9444108  T
Q  420 actctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgt 519  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444107 actctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgt 9444008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 9439786 - 9439372
Alignment:
Q  20 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439786 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 9439687  T
Q  120 gaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattct 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  9439686 gaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagttagtattct 9439588  T
Q  220 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 319  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439587 cctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 9439488  T
Q  320 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439487 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 9439388  T
Q  420 actctggtacctaaca 435  Q
    ||||||||||||||||    
T  9439387 actctggtacctaaca 9439372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
Q  362 tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt 418  Q
    |||||||||| || |||||||||| |||||||||||||| | |||||||||||||||    
T  4799315 tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt 4799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 4844870 - 4844943
Alignment:
Q  363 gtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag 436  Q
    ||||||||| ||| |||| ||||  ||||||||||  | |||||||||| ||||||| |||| |||||||||||    
T  4844870 gtgtgttcaattcttcttatctcaactcttatttttacagcgtgataatgttttgtttctcttgtacctaacag 4844943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 520
Target Start/End: Original strand, 42265806 - 42266305
Alignment:
Q  20 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42265806 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagtatcccaaatcagtaacaacacaa 42265905  T
Q  120 gaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattct 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  42265906 gaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagtttgtattct 42266004  T
Q  220 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266005 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 42266104  T
Q  320 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266105 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 42266204  T
Q  420 actctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgt 519  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266205 actctggtatctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgt 42266304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 42270525 - 42270941
Alignment:
Q  20 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42270525 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagtatcccaaatcagtaacaacacaa 42270624  T
Q  120 gaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattct 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  42270625 gaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagtttgtattct 42270723  T
Q  220 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270724 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 42270823  T
Q  320 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270824 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 42270923  T
Q  420 actctggtacctaacagt 437  Q
    ||||||||| ||||||||    
T  42270924 actctggtatctaacagt 42270941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 96 - 520
Target Start/End: Complemental strand, 48702159 - 48701736
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  48702159 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 48702061  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48702060 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 48701961  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701960 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 48701861  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  48701860 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggt 48701761  T
Q  496 aagaaaaatcttagtatgctctgtg 520  Q
    |||||||||||||||||||||||||    
T  48701760 aagaaaaatcttagtatgctctgtg 48701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 138 - 520
Target Start/End: Complemental strand, 30950481 - 30950098
Alignment:
Q  138 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 235  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  30950481 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 30950382  T
Q  236 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt 335  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30950381 agtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccc-ttatt 30950283  T
Q  336 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  30950282 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacctaaca 30950183  T
Q  436 gtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 520  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950182 gtggtatcagagctcctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 30950098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 96 - 429
Target Start/End: Complemental strand, 24520363 - 24520031
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24520363 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 24520265  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24520264 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 24520165  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520164 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 24520065  T
Q  396 ttagctgcgtgataatattttgttactctggtac 429  Q
    |||| |||||||||||||||||||||||||||||    
T  24520064 ttagttgcgtgataatattttgttactctggtac 24520031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 96 - 435
Target Start/End: Complemental strand, 48697470 - 48697131
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  48697470 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 48697372  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48697371 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 48697272  T
Q  296 aaagttctctactcttgccccgtggtt-ttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttat 394  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48697271 aaagttctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttat 48697172  T
Q  395 tttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48697171 tttagctgcgtgataatattttgttactctggtacctaaca 48697131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 138 - 436
Target Start/End: Complemental strand, 30945775 - 30945476
Alignment:
Q  138 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 235  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  30945775 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 30945676  T
Q  236 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt 335  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  30945675 agtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgatttttt-cccttatt 30945577  T
Q  336 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30945576 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacctaaca 30945477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 144 - 435
Target Start/End: Original strand, 10427315 - 10427597
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  10427315 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaa 10427404  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 342  Q
    ||   ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||    
T  10427405 tttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttgag 10427504  T
Q  343 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  10427505 gggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaaca 10427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 227 - 422
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
Q  227 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt 326  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| | |||||||||||||||||||||||||||         |||| ||  |||||    
T  48782850 ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttct---------ccccatg--ttttt 48782936  T
Q  327 ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact 422  Q
    ||| ||||||||||||   ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||   |||||||||||||||| ||||    
T  48782937 ccctttatttgttgagaaatttccacgt-aaatattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact 48783031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 1979253 - 1979375
Alignment:
Q  183 tgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaattt 282  Q
    ||||||||||||||| ||| ||| ||||    |||||||| |||||||||||||||||||| | ||| ||||||| ||||  ||||||||| ||||||||    
T  1979253 tgtgaggtttctcctggttagtgctagt----attctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaattt 1979346  T
Q  283 cttccacttagtgaaagttctctactctt 311  Q
    ||||| |||| |||||||| |||||||||    
T  1979347 cttcctcttactgaaagttatctactctt 1979375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
Q  284 ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt 382  Q
    ||||||||| |||||||||| |||||||  || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| |||||||    
T  17248015 ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt 17248112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
Q  356 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 433  Q
    ||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||||    
T  36615438 aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa 36615361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
Q  356 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 424  Q
    ||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| ||||||||||||||    
T  30165900 aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct 30165968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 369
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
Q  331 ttatttgttgaggggtttccacgtaaaatattgtgtgtt 369  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1979567 ttatttgttgaggggtttccacgt-aaatattgtgtgtt 1979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
Q  415 ttgttactctggtacctaacagtggtatcagagcccttggtt 456  Q
    |||||| |||| |||||||||||||||||||||| |||||||    
T  1999189 ttgttattctgatacctaacagtggtatcagagcacttggtt 1999230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 96 - 520
Target Start/End: Complemental strand, 5823613 - 5823190
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  5823613 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5823515  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5823514 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 5823415  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823414 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 5823315  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5823314 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggt 5823215  T
Q  496 aagaaaaatcttagtatgctctgtg 520  Q
    |||||||||||||||||||||||||    
T  5823214 aagaaaaatcttagtatgctctgtg 5823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 96 - 435
Target Start/End: Complemental strand, 5818851 - 5818513
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  5818851 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5818753  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5818752 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 5818653  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818652 aaagttctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 5818553  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  5818552 ttagttgcgtgataatattttgttactctggtacctaaca 5818513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 54545767 - 54546200
Alignment:
Q  20 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaaca-ca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||    
T  54545767 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcatcatcccaaatcagtaacaccatca 54545866  T
Q  119 -agaacaa-gtaaagc---------ttgtt-----tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagttt 202  Q
     ||||||| ||||  |         |||||     |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |     
T  54545867 cagaacaaagtaacacaacaactacttgttcttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggta 54545966  T
Q  203 gtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagt 300  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  54545967 gtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagt 54546066  T
Q  301 tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc 400  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  54546067 tctctactctagccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtatgttcagttcctcttttctcatctcttattttagc 54546165  T
Q  401 tgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||||||||||||||||||    
T  54546166 tgcgtgataatattttgttactctggtacctaaca 54546200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 96 - 520
Target Start/End: Complemental strand, 2817589 - 2817178
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||| |||||||||||                
T  2817589 catcccaaatcagtaacaacacaagaacaagtaaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct------------ 2817502  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagag--tggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag 293  Q
      ||||||| |||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  2817501 --agtttgtattagttagtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttag 2817404  T
Q  294 tgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctctta 393  Q
    ||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2817403 tgagagttctttactcttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctctta 2817305  T
Q  394 ttttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtg 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||| || |||||||||||| |||    
T  2817304 ttttagctgcgtgataatattttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgcagtaataaactagtggtgtg 2817205  T
Q  494 gtaagaaaaatcttagtatgctctgtg 520  Q
    |||||||||||||||||||||| ||||    
T  2817204 gtaagaaaaatcttagtatgctatgtg 2817178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 282 - 435
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
Q  282 tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt 381  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24659287 tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt 24659190  T
Q  382 tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  24659189 tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca 24659136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 321 - 427
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
Q  321 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4579254 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta 4579353  T
Q  421 ctctggt 427  Q
    |||||||    
T  4579354 ctctggt 4579360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 249 - 421
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
Q  249 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtt 347  Q
    |||||||| |||||||||||  ||  |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||    
T  31204950 ctctccttatatttagagag--gttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtt 31204853  T
Q  348 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac 421  Q
    ||||||| |||||||||| |||||||||||||||| || |||||| ||||| ||||||| ||||||||||||||    
T  31204852 tccacgt-aaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac 31204781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 24671301 - 24671173
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  24671301 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaa 24671212  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaattt 282  Q
    ||   ||||||||||||||||||||| ||| ||||||||    
T  24671211 tttgtctctccttgtatttagagagaagtcttgtaattt 24671173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 397
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
Q  240 gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgt 338  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||  || | ||||||||||  |||  ||||||||  ||| |||    
T  35977103 gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt 35977200  T
Q  339 tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt 397  Q
    ||| || |||  |||| ||||||||| |||||| || ||||||||||  ||||||||||    
T  35977201 tgatggttttttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt 35977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
Q  391 ttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagag 447  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  25877086 ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag 25877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 269
Target Start/End: Original strand, 4579126 - 4579241
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||| |||        |||| ||||||||||||||  | ||||||| |||||    
T  4579126 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcatag--------agttagtattctcctattt-cacgagagag-ggtaa 4579215  T
Q  244 ttgtactctccttgtatttagagaga 269  Q
    ||   |||||||||||||||||||||    
T  4579216 tttgtctctccttgtatttagagaga 4579241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 96 - 520
Target Start/End: Original strand, 41718389 - 41718812
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  41718389 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 41718487  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41718488 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 41718587  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718588 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 41718687  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  41718688 ttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggt 41718787  T
Q  496 aagaaaaatcttagtatgctctgtg 520  Q
    |||||||||||||||||||||||||    
T  41718788 aagaaaaatcttagtatgctctgtg 41718812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 62 - 435
Target Start/End: Original strand, 34359900 - 34360273
Alignment:
Q  62 tcctataaatagctagcc-gtgaatcattgttcagcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatat 160  Q
    |||||||||||||| ||| ||||||||||    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34359900 tcctataaatagcttgcccgtgaatcatttccaatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatat 34359998  T
Q  161 agagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtat 260  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  34359999 agagagaaaaattagtttctcctgtgagatttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtag 34360098  T
Q  261 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34360099 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaata 34360198  T
Q  361 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360199 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 34360273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 96 - 435
Target Start/End: Original strand, 41723115 - 41723453
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  41723115 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 41723213  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41723214 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 41723313  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723314 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 41723413  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41723414 ttagctgcgtgataatattttgttactctggtacctaaca 41723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 96 - 435
Target Start/End: Complemental strand, 29585639 - 29585300
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29585639 catcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 29585540  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  29585539 ctagtttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtg 29585440  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585439 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 29585340  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  29585339 ttagctgcatgataatattttgttactctgatacctaaca 29585300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 62 - 416
Target Start/End: Original strand, 34352192 - 34352546
Alignment:
Q  62 tcctataaatagctagcc-gtgaatcattgttcagcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatat 160  Q
    |||||||||||||| ||| ||||||||||    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34352192 tcctataaatagcttgcccgtgaatcatttccaatcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatat 34352290  T
Q  161 agagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtat 260  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  34352291 agagagaaaaattagtttctcctgtgagatttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtag 34352390  T
Q  261 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352391 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 34352490  T
Q  361 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352491 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt 34352546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 27874404 - 27873990
Alignment:
Q  20 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagcatcccaaatcagtaacaacacaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27874404 catggtgccttaaatgcaagttgttgaggcaatggattttgctcctataaatagctagccgtgaatcattgttcagtatcccaaatcagtaacaacacaa 27874305  T
Q  120 gaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattct 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  27874304 gaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagtttgtattct 27874206  T
Q  220 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874205 cctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtg 27874106  T
Q  320 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 419  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  27874105 gttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagatgcgtgataatattttgtt 27874006  T
Q  420 actctggtacctaaca 435  Q
    ||||||||||||||||    
T  27874005 actctggtacctaaca 27873990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 138 - 520
Target Start/End: Complemental strand, 27879008 - 27878624
Alignment:
Q  138 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagag 235  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  27879008 tagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag 27878909  T
Q  236 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878908 agtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt 27878809  T
Q  336 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878808 tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 27878709  T
Q  436 gtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 520  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878708 gtggtatcagagcccctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 27878624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 96 - 435
Target Start/End: Original strand, 1234680 - 1235018
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  1234680 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 1234778  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1234779 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 1234878  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234879 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 1234978  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1234979 ttagctgcgtgataatattttgttactctggtacctaaca 1235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 96 - 435
Target Start/End: Complemental strand, 26976469 - 26976131
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  26976469 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 26976371  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26976370 ctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 26976271  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976270 aaagttctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 26976171  T
Q  396 ttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26976170 ttagctgcgtgataatattttgttactctggtacctaaca 26976131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 144 - 435
Target Start/End: Original strand, 18967912 - 18968194
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| ||||||||| |||| |||  ||||||||| ||||||||||||||||||        ||| ||||||||||||||  | ||||||| | |||    
T  18967912 agtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctagt--------gttagtattctcctatttc-atgagagag-gctaa 18968001  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 342  Q
    ||   ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18968002 tttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgag 18968101  T
Q  343 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18968102 gggtttccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 18968194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 160 - 436
Target Start/End: Original strand, 30986552 - 30986830
Alignment:
Q  160 tagagagaaa-aattagtttctcctg-tgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttg 257  Q
    |||||||||| || |||||||||||  ||||||||||||||| | |||| |||    ||||| ||||||| |||||||||||||||||||||||||||||    
T  30986552 tagagagaaagaaatagtttctcctcatgaggtttctcctaggtagtgtcagt----attcttctatttacaagagagagtggtaattgtactctccttg 30986647  T
Q  258 tatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtgg--ttttttccccttatttgttgagggg---tttccac 352  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||   |||||||    
T  30986648 catttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgttgaggggtactttccac 30986747  T
Q  353 gtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag 436  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  30986748 gt-aaatattgtgcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaacag 30986830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 147 - 389
Target Start/End: Original strand, 30966683 - 30966923
Alignment:
Q  147 gagagaaaaaatatagagagaaa-aattagtttctcct-gtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaat 244  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||||| | |  | |||    ||||| ||||||| ||||||||||||||||    
T  30966683 gagagaaaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt----attcttctatttacaagagagagtggtaat 30966778  T
Q  245 tgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgagg 343  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |    
T  30966779 tgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttgatg 30966878  T
Q  344 ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 389  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  30966879 ggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 384 - 520
Target Start/End: Original strand, 30967674 - 30967810
Alignment:
Q  384 tcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac 483  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  30967674 tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac 30967773  T
Q  484 tagtggagtggtaagaaaaatcttagtatgctctgtg 520  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30967774 tagtggtgtggtaagaaaaatcttagtatgctctgtg 30967810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 430
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg 343  Q
    |||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| ||||||    
T  21966677 ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg 21966775  T
Q  344 ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 430  Q
    ||||||||| | ||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| |||||||    
T  21966776 ggtttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc 21966860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 267 - 520
Target Start/End: Complemental strand, 23012667 - 23012415
Alignment:
Q  267 agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt 366  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||  |||||||| ||| | |||||| || | ||||||||||||| || |||||    
T  23012667 agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgt 23012571  T
Q  367 gttcagttcctctttt-ctcgtctcttattttagctgcgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctg 464  Q
    ||||| ||| |||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||| |||| ||  ||  ||||| |||| |||||| ||    
T  23012570 gttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttg 23012471  T
Q  465 ttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 520  Q
    || |||| |    | |||| |||| |||||||||||||| ||||||||||| ||||    
T  23012470 ttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtg 23012415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 96 - 426
Target Start/End: Complemental strand, 5198993 - 5198664
Alignment:
Q  96 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  5198993 catcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc 5198895  T
Q  196 ctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5198894 ctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtg 5198795  T
Q  296 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198794 aaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatt 5198695  T
Q  396 ttagctgcgtgataatattttgttactctgg 426  Q
    |||||||||||||||||||||||||||||||    
T  5198694 ttagctgcgtgataatattttgttactctgg 5198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 272 - 520
Target Start/End: Original strand, 825632 - 825881
Alignment:
Q  272 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  825632 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc 825731  T
Q  371 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  825732 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc 825831  T
Q  471 cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 520  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  825832 cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtg 825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 146 - 513
Target Start/End: Original strand, 15602905 - 15603272
Alignment:
Q  146 tgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaatt 245  Q
    |||||| ||||||||||| ||||||||||| || | || ||||||||||| ||||  ||||||||| ||||||||||||||| |||| ||| ||||||||    
T  15602905 tgagaggaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagttagtattctcctatttacaagatagaatggtaatt 15603004  T
Q  246 gtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagggg 345  Q
    |||| |||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603005 gtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagggg 15603104  T
Q  346 tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||   ||| ||||||| ||||||    
T  15603105 tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactctcacacccaacagtgctatcag 15603204  T
Q  446 agcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 513  Q
    || | ||||||||||  |||||||||| ||  | ||||| |||||||||||||||| |||||||||||    
T  15603205 agtcattggttcgtaattgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagtatg 15603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 272 - 435
Target Start/End: Original strand, 830288 - 830452
Alignment:
Q  272 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 370  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  830288 tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 830387  T
Q  371 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  830388 agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca 830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 168 - 428
Target Start/End: Original strand, 28715816 - 28716070
Alignment:
Q  168 aaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagaga 267  Q
    |||| ||||||||| ||| ||||||||||||| | ||||||||    ||||||||||||||| || |  ||||||||||||||||||||| |||||||||    
T  28715816 aaaaatagtttctcttgtaaggtttctcctaggtagtgttagt----attctcctatttataggaaacggtggtaattgtactctccttgcatttagaga 28715911  T
Q  268 gaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtg 367  Q
    || ||||||||||||||||||||| |||||||||||||| ||||  |  |||| |||||||||||||||  |||||||||||||||| ||||||||||||    
T  28715912 gatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtgg-tttttccccttatttaatgaggggtttccacgt-aaatattgtgtg 28716009  T
Q  368 ttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggta 428  Q
    |||| |||||||||| |||||||||||||||  || |||||||||||||||||||||||||    
T  28716010 ttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctggta 28716070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 144 - 426
Target Start/End: Complemental strand, 30397191 - 30396920
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| || ||||||||||| |||  |||||||||||||||| |||||||||||        |||  |||||||||||||  || | |||| |||||    
T  30397191 agtgagaggaacaatatagagaggaaatatagtttctcctgtgagatttctcctagt--------gttaatattctcctatttc-aacatagag-ggtaa 30397102  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgag 342  Q
    ||   |||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||    
T  30397101 tttgtctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgag 30397002  T
Q  343 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg 426  Q
    ||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30397001 gggtttcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg 30396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 513
Target Start/End: Complemental strand, 13844014 - 13843719
Alignment:
Q  215 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc 314  Q
    |||||||||||| ||| | |||||||||||| || ||| |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| ||  |    
T  13844014 attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac 13843915  T
Q  315 ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttca-gttcctcttttctcgtctcttattttagctgcgtgataatat 413  Q
    |  |   |||||| |||||||||||||||||||||||||| ||||||  ||||||||  || || |||||||    |||| ||||  | |||||||||||    
T  13843914 ctat-aatttttctccttatttgttgaggggtttccacgt-aaatat--tgtgttcatttttcttttttctcaaaacttactttacttacgtgataatat 13843819  T
Q  414 tttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 513  Q
    ||| |||||||| || | |  |||||||| |||||| |||| ||||    ||| |||||||||   ||||| ||||||||||||||||||| ||||||||    
T  13843818 tttattactctgatagccacaagtggtattagagccattggctcgtgatagttgttccgctgtagcaaactggtggagtggtaagaaaaatattagtatg 13843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 830205 - 830291
Alignment:
Q  138 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct 222  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||    
T  830205 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct 830291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 435
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
Q  275 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 374  Q
    ||||||||||| |  ||||||||||||||||||||||  |  ||||||||||  | |||||| ||||| | |||||||||||| |||||| ||||  |||    
T  31593068 tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt 31592971  T
Q  375 cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||| ||||    
T  31592970 cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca 31592910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 825549 - 825635
Alignment:
Q  138 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct 222  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||  ||||||||||||||    
T  825549 tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgttagtgtttgtattctcct 825635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 213 - 435
Target Start/End: Complemental strand, 13840456 - 13840240
Alignment:
Q  213 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 312  Q
    |||||||  ||||| ||||||||| | ||||||||||||||||| |||||||||||||||  |||||||| ||  |||| || ||| || ||||||||||    
T  13840456 gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttg 13840358  T
Q  313 ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 412  Q
    | || ||  |||| |||||| ||||||||||  ||  || || ||||||  ||||||| ||||||| |||||| ||| ||||| ||  | ||||||||||    
T  13840357 ctccatg--ttttcccccttgtttgttgaggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataata 13840263  T
Q  413 ttttgttactctggtacctaaca 435  Q
    |||||||| ||||||||| ||||    
T  13840262 ttttgttattctggtacccaaca 13840240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 8004167 - 8004292
Alignment:
Q  213 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 312  Q
    ||||||||||||||||||||||||||| |||||||||||| |||  ||||| ||||||||  | |||||||||||| | |||||||||| |||| || |     
T  8004167 gtattctcctatttataagagagagtg-taattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcata 8004265  T
Q  313 ccccgtggttttttccccttatttgttg 340  Q
    |||||| | ||||||| |||||||||||    
T  8004266 ccccgttg-tttttcctcttatttgttg 8004292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 415
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
Q  300 ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag 399  Q
    ||||||||||||| ||  | |||||||||  |||||| |||||  ||||||||  ||||||||||||||||| || || |||| || ||| |||||||||    
T  12175881 ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag 12175784  T
Q  400 ctgcgtgataatattt 415  Q
     |||||||||||||||    
T  12175783 ttgcgtgataatattt 12175768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
Q  371 agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 420  Q
    ||||| ||||||||||||| || |||||||||||| ||||||||| ||||    
T  9358207 agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta 9358158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 42117769 - 42117876
Alignment:
Q  265 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 364  Q
    ||||||||| | ||||||||  |  ||| |||||||| |||||| ||| | ||||||||| ||||||||||  ||||| |||||| |||| |||||||||    
T  42117769 agagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgt-aaatattgt 42117866  T
Q  365 gtgttcagtt 374  Q
     |||||||||    
T  42117867 atgttcagtt 42117876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 144 - 430
Target Start/End: Complemental strand, 16183913 - 16183636
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  16183913 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaa 16183824  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 342  Q
    ||   ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183823 tttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 16183724  T
Q  343 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183723 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 16183636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 138 - 435
Target Start/End: Original strand, 30235038 - 30235339
Alignment:
Q  138 tagagtagtgagagaaaaaatatagagagaaaaattagtttctcctg-tgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagaga 234  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||| ||  | ||||||||  ||||||||||||||||||||||||    
T  30235038 tagagtagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtattctcctatttataagaga 30235137  T
Q  235 gagtggtaattgtactctccttgtatttag-agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-cccctt 332  Q
    |||||||||||||||||||||| ||  ||| |||||||||||||||||||||| | ||| |||||||| |||||||||  ||||||||||||| ||||||    
T  30235138 gagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttcccctt 30235237  T
Q  333 atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtaccta 432  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| || ||||||||||| |||||||||||| |    
T  30235238 attcgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtaccca 30235336  T
Q  433 aca 435  Q
    |||    
T  30235337 aca 30235339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 213 - 459
Target Start/End: Complemental strand, 8140183 - 8139940
Alignment:
Q  213 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 312  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||| ||||     
T  8140183 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta 8140086  T
Q  313 ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 412  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||||    
T  8140085 ccccatggttttctccccttatttgttgaggggtttccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataata 8139987  T
Q  413 ttttgttactctggtacctaacagtggtatcagagcccttggttcgt 459  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||    
T  8139986 ttttgttactctggtacccaacagtggtattagagccattggttcgt 8139940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 249 - 515
Target Start/End: Complemental strand, 8138645 - 8138384
Alignment:
Q  249 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 348  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| ||||||||    
T  8138645 ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt 8138546  T
Q  349 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagc 448  Q
    |||| | || || |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| |||||    
T  8138545 ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagc 8138447  T
Q  449 ccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct 515  Q
    | ||||||||| |  ||||||| || |     |||| || |||||||||||||||||||||||||||    
T  8138446 cattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct 8138384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 432 - 520
Target Start/End: Original strand, 25441073 - 25441161
Alignment:
Q  432 aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 520  Q
    |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25441073 aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 25441161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 422
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
Q  277 taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc 376  Q
    |||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || || ||||||| ||| || ||| ||    
T  5102749 taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc 5102653  T
Q  377 tc-ttttctcgtctcttattttagctgcgtgataatattttgttact 422  Q
    || ||||||| ||| ||||||||| || |||||||||||||||||||    
T  5102652 tctttttctcatcttttattttagttgagtgataatattttgttact 5102606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 435
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
Q  320 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 419  Q
    |||||||  ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| ||  || ||||||    
T  36528529 gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt 36528431  T
Q  420 actctggtacctaaca 435  Q
    |||||| |||| ||||    
T  36528430 actctgatacccaaca 36528415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 144 - 435
Target Start/End: Complemental strand, 27508 - 27226
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| |||||| |||||||  |||||||| ||||||    
T  27508 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattcacctatttc-aagagaga-tggtaa 27419  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 342  Q
    ||   ||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27418 tttgtctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 27319  T
Q  343 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27318 gggtttccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 27226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 144 - 435
Target Start/End: Original strand, 46191266 - 46191546
Alignment:
Q  144 agtgagagaaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaa 243  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||        ||| ||||||||||||||  ||||||||| |||||    
T  46191266 agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaa 46191355  T
Q  244 ttgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgag 342  Q
    ||   |||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46191356 tttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttgag 46191455  T
Q  343 gggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  46191456 gggtttccacgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaaca 46191546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
Q  249 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 348  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30697300 ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt 30697201  T
Q  349 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 430  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30697200 ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc 30697120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 249 - 435
Target Start/End: Original strand, 4130215 - 4130401
Alignment:
Q  249 ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 347  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  4130215 ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt 4130314  T
Q  348 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 435  Q
    ||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||    
T  4130315 tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca 4130401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 30674865 - 30674787
Alignment:
Q  213 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag 293  Q
    ||||||||||||| | |||||||| || ||||||| |||||||| | ||||| |||||||  | |||||||||||||||||    
T  30674865 gtattctcctatt-acaagagagaatg-taattgttctctccttatttttagtgagaggttgtataatttcttccacttag 30674787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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