View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_14 (Length: 484)
Name: NF11915_low_14
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 96 - 417
Target Start/End: Original strand, 5517720 - 5518044
Alignment:
| Q |
96 |
tggtgttattataaacaagatttagttatatacattg-----ttcgattgaacaaccagtaagatattttatcctatgtgggtggatgtgtattttagta |
190 |
Q |
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| T |
5517720 |
tggtgttattataatcaagattgagttatatacaatacatcattcgatcgaacaaccagtaagatattttatcctatgtgggaggatgtgtattctagta |
5517819 |
T |
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| Q |
191 |
ggctaatttaccgaacaaaactgaattcctttgcatggagaacagttatactatttatagaaaaagaaaagaaactaattatctttaggttttgtatgaa |
290 |
Q |
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| T |
5517820 |
ggctaatttatcgaacaaaactgaattcctttccatggagaacaattagactatttatagaaaaagagaagaatctaa----ctttagattttgtatgaa |
5517915 |
T |
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| Q |
291 |
tgaaacatgtcttct--taactacttaaaaatttccgttgcaagtttcttctgatcttaaaattctagtctttgataacttctgaaatgaagttattttt |
388 |
Q |
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||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |
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| T |
5517916 |
tgaaacatgtcttcttatagctacttaaaaacttccgttgcaagtttcttctgatcttcaaattctagtctttgctaacttctgaaatgaacttattttt |
5518015 |
T |
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| Q |
389 |
gttgtaaccaactcataaacttctcttgt |
417 |
Q |
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| T |
5518016 |
gttgtaaccaactcataaacttctcttgt |
5518044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 29718901 - 29718976
Alignment:
| Q |
114 |
gatttagttatatacattgttcgattgaacaaccagtaagatattttatcctatgtgggtggatgtgtattttagtag |
191 |
Q |
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| T |
29718901 |
gattgagttacatacattgttcga-tcaacaaccaataagatgttttatcgtatgtggg-ggatgtgtaatctagtag |
29718976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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