View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11915_low_19 (Length: 413)
Name: NF11915_low_19
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 14025034 - 14024655
Alignment:
| Q |
16 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14025034 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacg |
14024935 |
T |
|
| Q |
116 |
agattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14024934 |
agattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaat |
14024835 |
T |
|
| Q |
216 |
atcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14024834 |
atcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgctagatttgtcacat |
14024735 |
T |
|
| Q |
316 |
aatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttgacct |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14024734 |
aatcaattatctggagaaattccaacgagtacacaactacaaagttttgattcctcatgttatgaagataatcttgacct |
14024655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 13875612 - 13875988
Alignment:
| Q |
16 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacg |
115 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||| || ||||| ||||| | || ||||||||||||||| | | |
|
|
| T |
13875612 |
aatgcactcttaacatggaaaggtgtagaacaagtgttcaacaacaatcaattgtttcttctaaaaagtgtagatctctcgagcaatcacttttcacaag |
13875711 |
T |
|
| Q |
116 |
agattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaac |
215 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13875712 |
agattccacctgaaatagctaatttgattcaattggtctcattgaacttatcaagaaataacttcacagggaaaattccttcaagaattggaaagctaac |
13875811 |
T |
|
| Q |
216 |
atcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacat |
315 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| | |||||| || |||| ||||||||||||||||||| |
|
|
| T |
13875812 |
atcacttgactttcttgatttgtctagaaataagttgattggttcaattccttctagtctttctcaaatagaccggcttggtgtgttagatttgtcacat |
13875911 |
T |
|
| Q |
316 |
aatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
13875912 |
aaccaattatctggagagattccaaagagtacacaactacaaagtttcaatgcctcaaattacgaagataatcttga |
13875988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 14014903 - 14014527
Alignment:
| Q |
16 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| | |
|
|
| T |
14014903 |
aatgcattcttgacatggaaaggtgtagaacaagagttcaacaacaatggcttgtctcttctgaaaagcatagatctatccagcaatcacttctcagaag |
14014804 |
T |
|
| Q |
116 |
agattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaac |
215 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||||||| |||||||||||||||||| ||| || |||||||||||||||| ||||||||| |||| |
|
|
| T |
14014803 |
agattccaccagaaatagcaaatttgattcaattggtctcgttgaacttatcaagaaacaacttgacggggaaaattccttcaaatattggaaagctaac |
14014704 |
T |
|
| Q |
216 |
atcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacat |
315 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||| |||||||||| ||||||||||| | |||| | || |||| ||||||||||||||||||| |
|
|
| T |
14014703 |
atcacttgactttcttgatttctcaagaaataatttgctttgttcaattccatctagtctttcacaaatacaccggcttggtgtgttagatttgtcacat |
14014604 |
T |
|
| Q |
316 |
aatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
14014603 |
aatcaattatcgggagaaattccaaggagtacacaactacaaagtttcaatgcctcaagttacgaagataatcttga |
14014527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 14110227 - 14109853
Alignment:
| Q |
18 |
tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||| || ||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
14110227 |
tgcattcttgacatggaaaggtgtagaacaagagtttaacaacaatggcttgtatcttctaaaaagcatagacctatccagcaatcacttctcagaagag |
14110128 |
T |
|
| Q |
118 |
attccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaacat |
217 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
14110127 |
attccacctgaaattgcagatttgattcaattggtctcgttgaacttatcaagaaacaacttgacagggaaaattccttcaaatattggaaatctaacat |
14110028 |
T |
|
| Q |
218 |
cacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacataa |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||||||||||| | ||||| || | ||||| || || ||||||||||||||||||||| |
|
|
| T |
14110027 |
cacttgactttcttgatttgtcacgaaataacttgtttggttcaattcctcccagtctctctcacatagaccggctaagtgtgttagatttgtcacataa |
14109928 |
T |
|
| Q |
318 |
tcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||| |
|
|
| T |
14109927 |
tcaattatctggagaaattccaacgagtacacaactacaaagtttcaatccctcaagttacgaagataatcttga |
14109853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 14022472 - 14022096
Alignment:
| Q |
15 |
aaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagac |
114 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| || || |||||||||||| | || |||||||||||||||| |
|
|
| T |
14022472 |
aaatccattcttaacatggaaaggtgtagaccaagtattcaacaacaatgaattgttgcttctaaaaagcatagatctctcaagcaatcacttttcagga |
14022373 |
T |
|
| Q |
115 |
gagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaa |
214 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||| |
|
|
| T |
14022372 |
gagattccacctgaaatagcgaatttgattcaattggtctcattgaacttatcaagaaacaacttcacaggaaaaattccttcaaatattggaaagctaa |
14022273 |
T |
|
| Q |
215 |
catcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcaca |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||| |||||| ||||||||||| | ||| ||||||||| |||||||||| ||||||| |
|
|
| T |
14022272 |
catcacttgactttcttgatttatcacaaaacaagttgcgtggtt-aattccttctagtctttctcaaattgatcgacttagtgtgttagatgtgtcaca |
14022174 |
T |
|
| Q |
315 |
taatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||| ||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
14022173 |
taatcaattatatggagagattccaacgtgtacacagctacaaagtttcgatccctcatgttacgaagataatcttga |
14022096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 13893316 - 13893692
Alignment:
| Q |
16 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacg |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||||||||||||| |||| ||| || ||||| |||||| | || ||||||||||||||| ||| |
|
|
| T |
13893316 |
aatgcattcttgatgtggaaaggtgtagaacaatttttcaacaacaatggattgcttcttctaaaaagtatagatctctcaagcaatcacttttcacacg |
13893415 |
T |
|
| Q |
116 |
agattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaac |
215 |
Q |
| |
|
|||||||||||||||| || |||| | ||||| |||||| | || |||||||||||| ||| ||||||||||||||||||| || ||||| ||||| |
|
|
| T |
13893416 |
agattccacctgaaatagcaactttggttcaattagtctcactaaatttatcaagaaacaacttgacagggaaaattccttcaaatatcggaaaattaac |
13893515 |
T |
|
| Q |
216 |
atcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| |||||||| |
|
|
| T |
13893516 |
atcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccttctagtctttccaaaatagatcggattggtgtgttagatctgtcacat |
13893615 |
T |
|
| Q |
316 |
aatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
13893616 |
aatcaattgtctggagaaattccaacgagtacacaactacaaagtttcaatgcctcaagttacgaagataatcttga |
13893692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 13863142 - 13863518
Alignment:
| Q |
16 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaat-gaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagac |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||| ||||||| || |||| ||| || |||||||||||| |||| |||||||||||||| || |
|
|
| T |
13863142 |
aatgcattgttgacatggaaaggtgtagaacaactgttcatcaacaatcgatttgt-tcttctaaaaagcatagatctatcaagcaatcacttttcggaa |
13863240 |
T |
|
| Q |
115 |
gagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaa |
214 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||||||| | || |||||||||||| ||| ||||||||||||||||||| || |||| ||||| |
|
|
| T |
13863241 |
gagattccacctgaaatagcaaatttgattcaattggtctcactaaatttatcaagaaacaacttgacagggaaaattccttcaaatatcggaaggttaa |
13863340 |
T |
|
| Q |
215 |
catcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcaca |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||| |||| || ||||||| ||||||| |
|
|
| T |
13863341 |
catcacttgaatttcttgatttgtcacaaaacaagttgtttggttcaattccttctagtctttcccaaatagatcggcttggtgggttagatgtgtcaca |
13863440 |
T |
|
| Q |
315 |
taatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||| |
|
|
| T |
13863441 |
taatcaattatctggtgaaattccaaagagtacacaactacaaggtttcaatgcctcattttacgaagataatcttga |
13863518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 13473302 - 13473676
Alignment:
| Q |
18 |
tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag |
117 |
Q |
| |
|
||||||||| || ||||||||||||||| || ||||||||||||||| ||||| ||| | |||||||||||| |||| ||||||||||||||||| ||| |
|
|
| T |
13473302 |
tgcattctttacctggaaaggtgtagaagaactgttcaacaacaatggattgtttcttttaaaaagcatagatctatcaagcaatcacttttcagaggag |
13473401 |
T |
|
| Q |
118 |
attccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaacat |
217 |
Q |
| |
|
||||||| |||||| || |||||||| ||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||| ||| || |
|
|
| T |
13473402 |
attccacttgaaatagcagatttgattcaattggtctctttgaacttatcaagaaacaattttacagggaaaattccttcaaatattggaaaactaagat |
13473501 |
T |
|
| Q |
218 |
cacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacataa |
317 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
13473502 |
cacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttcccaaatagatcggcttggtgtgttagatttgtcacataa |
13473601 |
T |
|
| Q |
318 |
tcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||||| || | ||| |||| |||||||||||||| |
|
|
| T |
13473602 |
tcaattatctggagagattccattgagcacacaactacaaagtttcaatccgtcaagttacgaagataatcttga |
13473676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 14047156 - 14046781
Alignment:
| Q |
17 |
atgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| || ||| | ||||| | || |||||||| |||||||| || |
|
|
| T |
14047156 |
atgcattcttgacatggaaaggtgtagaacatgtgttcaacaacaatggattggttcttctaaaagtcgtagatctttcaagcaatcatttttcagaaga |
14047057 |
T |
|
| Q |
117 |
gattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaaca |
216 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||| |||| |||||||| |||| |
|
|
| T |
14047056 |
aattccacctgaaattgcagatttgattcaattggtctcattgaatttatcaagaaacaacttcgcagggaaaattccatcaaatattggaaatctaacc |
14046957 |
T |
|
| Q |
217 |
tcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacata |
316 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| || | |||||| || ||| |||||||||| ||||||||| |
|
|
| T |
14046956 |
tcacttgactcccttgatttgtcacgaaataagttgcttggttcaattcctcctagtctatctcaaatagaccggcttagtgtgttagatctgtcacata |
14046857 |
T |
|
| Q |
317 |
atcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||| |
|
|
| T |
14046856 |
atcaattatctggcaagattccaacgagtacacaactacaaagtttcaatccctcaagttacgaagataatcttga |
14046781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 25 - 392
Target Start/End: Complemental strand, 14084414 - 14084047
Alignment:
| Q |
25 |
ttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgagattccac |
124 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| ||| | ||| || ||||||||||| | || |||||||||||||||| |||||||||| |
|
|
| T |
14084414 |
ttgacttggaaaggtgtagaacaaatgttcaaaaacaatggattatttcttctaaaaagcatagacctctcaagcaatcacttttcaggagagattccac |
14084315 |
T |
|
| Q |
125 |
ctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaacatcacttga |
224 |
Q |
| |
|
|||||| || ||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
14084314 |
atgaaatagcaaatttgattcaattggtctctttgaatttatcaagaaacaacttcacagggaaaattccttcaaatattggaaatctagcatcacttga |
14084215 |
T |
|
| Q |
225 |
ctttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacataatcaatta |
324 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||| |||||| || | |||||| || ||| ||||||||||||||| |||||||||||| |
|
|
| T |
14084214 |
ctttcttgatttttcacgaaataagttgcttggttcaattcctcatagtctctctcaaatagaccggcttagtgtgttagatttgtcgcataatcaatta |
14084115 |
T |
|
| Q |
325 |
tctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
|| ||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
14084114 |
tcgggagaaattccaaagagtacacaacttcaaagttttgatgcctcacgttacaaagataatcttga |
14084047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 13932116 - 13931740
Alignment:
| Q |
16 |
aatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacg |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||||| |||| ||| | ||| ||||||| | || || ||||| |||||||| | |
|
|
| T |
13932116 |
aatgcattgttgacatggaaaggtgtagaacatgtcttcaacaacaatggattggttcttttaaaagtcatagatctctcaagtaatcatttttcagaag |
13932017 |
T |
|
| Q |
116 |
agattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaac |
215 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
13932016 |
agattccacctgaaatagcagatttgattcaattggtctcattgaatttatcaagaaacaacttcacagggaaaattccatcaaatattggaaatctaac |
13931917 |
T |
|
| Q |
216 |
atcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgttagatttgtcacat |
315 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||| || | |||||| | ||| |||||||||| |||||||| |
|
|
| T |
13931916 |
ttcacttgactctcttgatttgtctcgaaataagttgcttggttcaattcctcctagtctctctcaaatagactggcttagtgtgttagatctgtcacat |
13931817 |
T |
|
| Q |
316 |
aatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatgaagataatcttga |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| | ||| || |||| |||||||||||||| |
|
|
| T |
13931816 |
aatcaattatctggagagattccaacgagtacacaactacaaagtttcaacgccacaagttacgaagataatcttga |
13931740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 13911450 - 13911239
Alignment:
| Q |
181 |
acagggaaaattccttcaagaattggaaagttaacatcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccgtctagtctttccc |
280 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| || | |
|
|
| T |
13911450 |
acagggaaaattccttcaaatttcggaaagttaacatcacttgactttcttgatttgtcacgaaataacttgcttggttcaattcctcctagtctctctc |
13911351 |
T |
|
| Q |
281 |
gaatagatcgacttgctgtgttagatttgtcacataatcaattatctggagaaattccaacgagtacacaactacaaagttttgatgcctcatgttatga |
380 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||| || |||| || |
|
|
| T |
13911350 |
acatagaccgtcttagtgtgttagatttgtcacataatcaattatctggagagattccaacaagtacacaactacaaagtttcaacgccacaagttacga |
13911251 |
T |
|
| Q |
381 |
agataatcttga |
392 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13911250 |
agataatcttga |
13911239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 13911572 - 13911460
Alignment:
| Q |
18 |
tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| | |||| ||| || ||||| |||||| | || ||||||||||||||| | ||| |
|
|
| T |
13911572 |
tgcattcttgatgtggaaaggtgtagaacaattgttcaacaacaa-ggattgcttcttctaaaaagtatagatctctcaagcaatcacttttcacaagag |
13911474 |
T |
|
| Q |
118 |
attccacctgaaat |
131 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13911473 |
attccacctgaaat |
13911460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 37164850 - 37164943
Alignment:
| Q |
147 |
attggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaacatcacttgactttcttgatttgtca |
240 |
Q |
| |
|
|||||| |||||||| |||||||| ||| || |||||| ||||| |||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
37164850 |
attggtgtcattgaatttatcaagcaacaatttgacaggggaaattacttcaatgattggaaagttaacatcacttgaatttcttgacttgtca |
37164943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 35143020 - 35142927
Alignment:
| Q |
147 |
attggtctcattgaacttatcaagaaactgcttcacagggaaaattccttcaagaattggaaagttaacatcacttgactttcttgatttgtca |
240 |
Q |
| |
|
|||||| |||||||| |||||||| ||| || || ||| ||||| ||||| ||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
35143020 |
attggtgtcattgaatttatcaagcaacaatttgactggggaaattacttcagagattggaaggttaacatcacttgaatttcttgacttgtca |
35142927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 38749107 - 38749160
Alignment:
| Q |
188 |
aaattccttcaagaattggaaagttaacatcacttgactttcttgatttgtcac |
241 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
38749107 |
aaattacttcaaagattggaaggttaacatcacttgaatttcttgacttgtcac |
38749160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 3022692 - 3022639
Alignment:
| Q |
187 |
aaaattccttcaagaattggaaagttaacatcacttgactttcttgatttgtca |
240 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
3022692 |
aaaattacttcaaagattggaaggttaacatcacttgaatttcttgacttgtca |
3022639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University