View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_2 (Length: 880)
Name: NF11915_low_2
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 830; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 1 - 854
Target Start/End: Complemental strand, 4486777 - 4485924
Alignment:
| Q |
1 |
ttattattaattcaataaatatccttgtatgtatgaagttgaattcagtcagaagtgagactaactatttatgaattcaagtattgtaatatcggatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486777 |
ttattattaattcaataaatatccttgtatgtatgaagttgaattcagtcagaagtgagactaactatttatgaattcaagtattgtaatatcggatata |
4486678 |
T |
|
| Q |
101 |
tgaactaaagatcttgtaatttcatgcagatgttccagaaaggctctcctcttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcaga |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486677 |
tgaactaaagatcgtgtaatttcatgcagatgttccagaaaggctctccccttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcaga |
4486578 |
T |
|
| Q |
201 |
gttgaaaagattggaagaaaagtggttaattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486577 |
gttgaaaagattggaagaaaagtggttaattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagctta |
4486478 |
T |
|
| Q |
301 |
tgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagacttgccac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486477 |
tgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagacttgccac |
4486378 |
T |
|
| Q |
401 |
cagaagaagataatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataattcaagcaa |
500 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486377 |
cagaagaaggtaatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataattcaagcaa |
4486278 |
T |
|
| Q |
501 |
ggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatacccctgagcattcacaggaactcgcttctataccaaaagacgta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4486277 |
ggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatactcctgagcattcagaggaactcgcttctataccaaaagacgta |
4486178 |
T |
|
| Q |
601 |
catattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagacactgtacaaaccaactttaattagttactgtgg |
700 |
Q |
| |
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| T |
4486177 |
catattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagacactgtacaaaccaactttaattagttactgtgg |
4486078 |
T |
|
| Q |
701 |
agattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgtttctt |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486077 |
agattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgtttctt |
4485978 |
T |
|
| Q |
801 |
ctctttgcacattggcatttggaaaataatctgcattatattttataattcatc |
854 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4485977 |
ctctttgcacattggcatttggaaaataatctgcattatattctataattcatc |
4485924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 127 - 667
Target Start/End: Complemental strand, 4480528 - 4479992
Alignment:
| Q |
127 |
cagatgttccagaaaggctctcctcttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagttgaaaagattggaagaaaagtggt |
226 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
4480528 |
cagatgttccagaaaggttctcctctcgtgaaagatgtatcgaaagctatattacatctctcagaaaatgcagagttgaagagattggaagaaaagtggt |
4480429 |
T |
|
| Q |
227 |
taattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatgggtcctatatgtcatgtctggtgc |
326 |
Q |
| |
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| ||| |||||||||||||||||| || || |||||||| |||| ||| |||||||||| |||||||||||||||| |||||||| || |||| | |
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| T |
4480428 |
-acttacctcacaggattgctccaataatgtgacatcctccaacggtacggatagtttgaaacttggaagcttatgggctctatatgttatctctgccac |
4480330 |
T |
|
| Q |
327 |
tacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagacttgccaccagaagaagataatggcacgccaagt |
426 |
Q |
| |
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|||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||| ||| | || | |
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| T |
4480329 |
cacttctaccatttgtgtgctaatatcaaccatcacgtgcctaaaatccaatcagccagatgaagacttgccaccagaaggc---aatgtcacacaaact |
4480233 |
T |
|
| Q |
427 |
gatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataattcaagcaaggaacaagatgtaatcgactgttctt |
526 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| || ||||||| |||||||||| |
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|
| T |
4480232 |
gatgaaagtgtgtggaaaaaggttattacatttgcaaagcagatttatagcaaaatgcgtaataattcaagcaaggcacgggatgtaactgactgttctt |
4480133 |
T |
|
| Q |
527 |
cgagatcaggtcatgcgagcatcgctgatacccctgagcattcacaggaactcgcttctataccaaaagacgtacatattacaccatataacataggaac |
626 |
Q |
| |
|
||||||||||||||||||| | || |||||||| ||||| || ||||||| ||||||| |||||||| ||||||| |||| || || |||||||||| |
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|
| T |
4480132 |
cgagatcaggtcatgcgagtaaagccgatacccccgagcaatcgcaggaacccgcttctccgccaaaagaagtacatactacaacacatgacataggaac |
4480033 |
T |
|
| Q |
627 |
tttagaaccacatacacttcaaaataattgtcatatcagac |
667 |
Q |
| |
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| ||||| || | |||||||||| ||||| |||||||||| |
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|
| T |
4480032 |
ataagaactacgtgcacttcaaaacaattggcatatcagac |
4479992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 699 - 806
Target Start/End: Complemental strand, 4479905 - 4479797
Alignment:
| Q |
699 |
ggagattcaattgtgt-aagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgttt |
797 |
Q |
| |
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||||||||||||| || ||||| ||||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||| || |
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| T |
4479905 |
ggagattcaattgggttaagtactgaaaaatagtagattcgttcatatgattcaataaaaatgttctttccttttgtttgtacctatcaattatccaatt |
4479806 |
T |
|
| Q |
798 |
cttctcttt |
806 |
Q |
| |
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|| |||||| |
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|
| T |
4479805 |
ctcctcttt |
4479797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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