View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11915_low_23 (Length: 383)
Name: NF11915_low_23
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 7156745 - 7157104
Alignment:
| Q |
3 |
caagaagcatctaggatagttttatcattgagagggtaatctaggtgcaaggcggtggggatggaggttacttttgtgannnnnnnnnnnnnnnggtaag |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
7156745 |
caagaagcaactaggatagttttatcattgagagggtaatctaggtgcaaggcagtggggatggaggttacttttgtgaagagagaggagagagggtaag |
7156844 |
T |
|
| Q |
103 |
acatgtggtcgacctcgagtgagaaatgggtgaaacttgagacgaggagacgtgggcgcgtggttgacacatgaaggtgctttttggcgaatttgtgatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7156845 |
acatgtggtcgacctcgagtgagaaatgggtgaaacttgagacgaggagacgtgggcgcgtggttgacacatgaaggtgctttttggcgaatttgtgatc |
7156944 |
T |
|
| Q |
203 |
ggagatgagatatttccattacttacagacgcattggagttgcatcagagacttcacgggaagccgggagagaatctctacaacgagatcgaatggaaga |
302 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7156945 |
gaagatgagagatttccattacttacagacgcattggagttgcatgagagacttcacgggaagccgggagagaatctctacaacgagatcgaatggaaga |
7157044 |
T |
|
| Q |
303 |
gtcggaagggaatctccaggaatagcagaggaggaagatggtgaagctagggttagggtt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7157045 |
gtcggaagggaatctccaggaatagcagaggaggaagatggtgaagctagggttagggtt |
7157104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 309
Target Start/End: Complemental strand, 11237033 - 11236881
Alignment:
| Q |
157 |
ggcgcgtggttgacacatgaaggtgctttttggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagactt |
256 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| ||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| || | || |
|
|
| T |
11237033 |
ggcgcgtggtggacacgtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggtattt |
11236934 |
T |
|
| Q |
257 |
cacgggaagccgggagagaatctctacaacgagatcgaatggaagagtcggaa |
309 |
Q |
| |
|
|| || |||| |||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
11236933 |
gactggcagcctggagagaatctccgcgacgatctcgaatggaagagtcggaa |
11236881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 319
Target Start/End: Original strand, 7169404 - 7169563
Alignment:
| Q |
160 |
gcgtggttgacacatgaaggtgctttttggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagacttcac |
259 |
Q |
| |
|
|||||||||||| ||||||| || || |||||||| ||||||||| ||| ||||||| ||||||||||| ||||||||||||| ||| |||| || |
|
|
| T |
7169404 |
gcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatgagaaacttgac |
7169503 |
T |
|
| Q |
260 |
gggaagccgggagagaatctctacaacgagatcgaatggaagagtcggaagggaatctcc |
319 |
Q |
| |
|
||||||| ||||||||| || | || | |||||||||||||| |||||| ||||||| |
|
|
| T |
7169504 |
tggaagcctggagagaatttccgccacaatctcgaatggaagagtgggaaggaaatctcc |
7169563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 24722675 - 24722544
Alignment:
| Q |
179 |
gtgctttttggcgaatttgtgatcggagatgagatatttccattacttacagacgcattggagttgcatcagagacttcacgggaagccgggagagaatc |
278 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||| |||| ||||| |||| || |||||| || ||||| || ||||||| ||||||| |
|
|
| T |
24722675 |
gtgctttttggcgaatttaggatgggagatgaatgatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcctatagagaatt |
24722576 |
T |
|
| Q |
279 |
tctacaacgagatcgaatggaagagtcggaag |
310 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| |
|
|
| T |
24722575 |
tctaacacaagatcgaatggaagagtgggaag |
24722544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University