View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_24 (Length: 381)
Name: NF11915_low_24
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 4486769 - 4487122
Alignment:
| Q |
10 |
taataataagtaaaggtgtacatcttttttagtgtaattgataaatcaaggatgaagaagggcattaatatgttaaattgcatcattacttacaaatcca |
109 |
Q |
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| T |
4486769 |
taataataagtaaaggtgtacatctttttgagtgtaattgataaatcaaggatgaagaagggcattaatatgttaaattgcatcattacttacaaatcca |
4486868 |
T |
|
| Q |
110 |
aatcctccaaatctagttctaggagtgaagccagtgtatctcttgcagtatttactgacaaatactttttcatatgggagctcaagaaaagcagctgcta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486869 |
aatcctccaaatctagttctaggagtgaagccagtgtatctcttgcagtatttactgacaaatactttttcatatgggagctcaagaaaagcagctgcta |
4486968 |
T |
|
| Q |
210 |
tgctgttattagagaatgcatcattatatttgtattcatcggtaatgtttatgatattctctggcttgaacttttcaactttctctaggaacgtcctaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486969 |
tgctgttattagagaatgcatcattatatttgtattcatcggtaatgtttatgatattctctggcttgaacttttcaactttctctaggaacgtcctaac |
4487068 |
T |
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| Q |
310 |
aaatgagtcgccgtcacaaccaattttcttgttgttgttcttcagccactgaat |
363 |
Q |
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| T |
4487069 |
aaatgagtcgccgtcacaaccaattttcttgttgttgttcttcagccactgaat |
4487122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 57 - 356
Target Start/End: Original strand, 4481924 - 4482220
Alignment:
| Q |
57 |
aaggatgaagaagggcattaatatgttaaattgcatcattacttacaaatccaaatcctccaaatctagttctaggagtgaagccagtgtatctcttgca |
156 |
Q |
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| T |
4481924 |
aagggtgaagaagggcattaatgtgttaaactgtatcatcacttacaaagcccaatcctccaaatctaatactcggagtggagccagtgtatttcttgca |
4482023 |
T |
|
| Q |
157 |
gtatttactgacaaatactttttcatatgggagctcaagaaaagcagctgctatgctgttattagagaatgcatcattatatttgtattcatcggtaatg |
256 |
Q |
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| T |
4482024 |
gtattcatcgatgaatactttttcatacgggatctcaagaaaagcagctgcaatgctgttattagcgaatgcatcatcatacttgtattcat---aaacg |
4482120 |
T |
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| Q |
257 |
tttatgatattctctggcttgaacttttcaactttctctaggaacgtcctaacaaatgagtcgccgtcacaaccaattttcttgttgttgttcttcagcc |
356 |
Q |
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| T |
4482121 |
cttatgatattctctggcttgaactttttaactttttctaagaacgtcctaacaaatgagtcgccgtcacaaccaactttcttgttgttgtccttcagcc |
4482220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 359
Target Start/End: Complemental strand, 34607183 - 34606921
Alignment:
| Q |
97 |
acttacaaatccaaatcctccaaatctagttctaggagt-gaagccagtgtatctcttgcagtatttactgacaaatactttttcatatgggagctcaag |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| || ||||| || ||| | ||||||||||||||||| ||||||| ||||| ||||| ||||| |
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| T |
34607183 |
acttacaaatccaagtcctccaaatctagtggtaggtgtagaagc-agagtaccccttgcagtatttactgatgtatactttctcataagggagttcaag |
34607085 |
T |
|
| Q |
196 |
aaaagcagctgctatgctgttattagagaatgcatcattatatttgtattcatcggtaatgtttatgatattctctggcttgaacttttcaactttctct |
295 |
Q |
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||||||||| || || || || |||| || | ||| || | ||||| ||||||||| ||| |||||||| ||||| ||||| |||| | || |
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| T |
34607084 |
aaaagcagcagcaattgagtagtttttgaatccagggtcataattattttcattactaatgtttacgatgttctctggtttgaatttttcgacttccact |
34606985 |
T |
|
| Q |
296 |
aggaacgtcctaacaaatgagtcgccgtcacaaccaattttcttgttgttgttcttcagccact |
359 |
Q |
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||| | |||||||||||||| || || ||||||||||||||| ||| ||| ||||||| ||||| |
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| T |
34606984 |
aggtatgtcctaacaaatgaatctccatcacaaccaattttcatgtcgttcttcttcaaccact |
34606921 |
T |
|
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