View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_25 (Length: 381)
Name: NF11915_low_25
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 152 - 368
Target Start/End: Complemental strand, 12080446 - 12080229
Alignment:
| Q |
152 |
ctattctcgtgtagtgaatcaaaaaagcatacacnnnnnnn-ttggttttttgaaacaagttcaaaagtagcaaaacannnnnnnnnnnnnnnnntaaaa |
250 |
Q |
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| T |
12080446 |
ctattctcgtgtagtgaatcaaaaaagcatacacaaaaaaaattggttttttgaaacaagttcaaaagtagcaaaacaagagagagaaagagagataaaa |
12080347 |
T |
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| Q |
251 |
attcaatttttatacactttttaatgattaaaaaacaacccttttttctaaatcaaagaggaaaaccaattctgtacagaaatcacagacttacccatga |
350 |
Q |
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| T |
12080346 |
attcaatttttatacactttttaatgattaaaaaacaacccttttttctaaatcaaagaggaaaaccaattctgtacagaaatcacagacttacccatga |
12080247 |
T |
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| Q |
351 |
aagcataaatctttctct |
368 |
Q |
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|||||||||||||||||| |
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| T |
12080246 |
aagcataaatctttctct |
12080229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 12080573 - 12080515
Alignment:
| Q |
19 |
ctacctaccaaacaaaagatgagtgtgagtgtgtgtatgtgtatgtttctttctcatgttcctgc |
83 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12080573 |
ctacctaccaaacaaaagatgagtgtgagtgtgtgt------atgtttctttctcatgttcctgc |
12080515 |
T |
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