View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_27 (Length: 352)
Name: NF11915_low_27
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 38609745 - 38609890
Alignment:
| Q |
1 |
ttatttacaacagtgaaataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcacttacagaaatagaga |
100 |
Q |
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| T |
38609745 |
ttatttacaacagtgaaataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcacttacagaaatagaga |
38609844 |
T |
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| Q |
101 |
gagtaaagagaaagtgagagggaaagagatggattggttgatgttt |
146 |
Q |
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| T |
38609845 |
gagtaaagagaaagtgagagggaaagagatggattggttaatgttt |
38609890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 38794529 - 38794674
Alignment:
| Q |
1 |
ttatttacaacagtgaaataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcacttacagaaatagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794529 |
ttatttacaacagtgaaataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcacttacagaaatagaga |
38794628 |
T |
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| Q |
101 |
gagtaaagagaaagtgagagggaaagagatggattggttgatgttt |
146 |
Q |
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| T |
38794629 |
gagtaaagagaaagtgagagggaaagagatggattggttaatgttt |
38794674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 34593404 - 34593468
Alignment:
| Q |
17 |
aataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcac |
85 |
Q |
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| T |
34593404 |
aatataattatcaaagagagtcatggttgttggatcaaaga----tacctaataaacatcttaaagcac |
34593468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 33078945 - 33079149
Alignment:
| Q |
22 |
aattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcacttacagaaatagagagagtaaagagaaagtgagagg |
121 |
Q |
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|||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
33078945 |
aattatcaaagaaagtcatggttgttggatcaaaga----tacctaataaacatcttaaagcacttatagaaat--agagagtatagagaaagtgagagg |
33079038 |
T |
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| Q |
122 |
gaaagagatggattggttgatgtttacctgtaagcatttcaatcatatggcaagtcagtgctataatctttctccttggttaaaacttaaaacactacat |
221 |
Q |
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| T |
33079039 |
gaaacagatggcttggttga--------tataagcatttcaatcatatggcaagtcagtgcaataatctttctctttggttaaaacttaaaac------- |
33079123 |
T |
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| Q |
222 |
ctgtattgtttaatgtttattgtatg |
247 |
Q |
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| T |
33079124 |
ctgtattgtttaatatttattgtatg |
33079149 |
T |
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