View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11915_low_37 (Length: 255)
Name: NF11915_low_37
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_37 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 4597619 - 4597381
Alignment:
| Q |
18 |
ccacggatttaaaacctcaaccgttcaattattcaatcatatgaaagcatttagcaatcttcgtcaagattccttcttctgcatagattc-tacgattta |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4597619 |
ccacgaatttaaaacctcaaccgttcaattattcaatcatatgaaagcatttagcaatcttcgccaagattccttcttctgcatagattcctacgattta |
4597520 |
T |
|
| Q |
117 |
cttcggtgttgatgaactacaaacaaccctagcttgtataggggaaacaaaagccttcttgttttccctctggttcttccttctctttatttctagaaca |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
4597519 |
ctttggtgttgatgaactacaaacaaccctagcttgtataggggtaacaaaagccttcttgttttccctctgattcttccttctcttaattgctagaaca |
4597420 |
T |
|
| Q |
217 |
ataaaataaaaaacaggtttcagcattaggcatttccct |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4597419 |
ataaaataaaaaacaggtttcagcattaggcatttccct |
4597381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University