View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_38 (Length: 255)
Name: NF11915_low_38
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 5517639 - 5517398
Alignment:
| Q |
3 |
atcattatatgtttcttgcgcaacaagcaaatacttgagacaataaacctgtcaactaagaactcaatctggatctaacttgaatcatatattgatcatc |
102 |
Q |
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| T |
5517639 |
atcattatatgtttcttgcacaccaagcaaatacttgagacaataaaccagtcaactaagaacccaacatg-atctaacttgaatcctagattgatcata |
5517541 |
T |
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| Q |
103 |
aagttcatttgttgaagagatatttttcttcgtcaacacggtcggtcaaatcatgaaatgttaaaatccagttatggtagtaaaattgtacctcatttga |
202 |
Q |
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| T |
5517540 |
aagttcatttgttgaagagatatttttcttcgtcaacacagtc----aaatcgtgaaatgttaaaatccagttatggtagtaaaattgtacctcatttga |
5517445 |
T |
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| Q |
203 |
atcaaaatgagatttagagcaacaggatggccacgttcaatcattgt |
249 |
Q |
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| T |
5517444 |
atcaaaatgagatttagagcaacagaatggccacgttcaatcattgt |
5517398 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 10423565 - 10423629
Alignment:
| Q |
185 |
aaattgtacctcatttgaatcaaaatgagatttagagcaacaggatggccacgttcaatcattgt |
249 |
Q |
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| T |
10423565 |
aaattgtacctcttttggatcaaaatgagatttagtgcaacaggatggccaagttccatcattgt |
10423629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 14174446 - 14174389
Alignment:
| Q |
75 |
atctaacttgaatcatatattgatcatcaagttcatttgttgaagagatatttttctt |
132 |
Q |
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| T |
14174446 |
atctaacttgagtcttaaattgatcatcgaattcatttattgaagtgatatttttctt |
14174389 |
T |
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