View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11915_low_4 (Length: 786)

Name: NF11915_low_4
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11915_low_4
NF11915_low_4
[»] chr5 (4 HSPs)
chr5 (6-444)||(14811302-14811741)
chr5 (446-753)||(14810972-14811277)
chr5 (350-421)||(11891980-11892052)
chr5 (451-554)||(11891824-11891927)
[»] chr8 (4 HSPs)
chr8 (210-321)||(26571588-26571701)
chr8 (230-326)||(12585648-12585745)
chr8 (451-550)||(45218389-45218487)
chr8 (463-503)||(35187505-35187545)
[»] chr7 (7 HSPs)
chr7 (451-553)||(29892883-29892982)
chr7 (451-554)||(8838361-8838463)
chr7 (230-326)||(22972912-22973009)
chr7 (451-534)||(41162859-41162942)
chr7 (443-537)||(30861984-30862078)
chr7 (348-443)||(8838520-8838616)
chr7 (451-503)||(48030251-48030303)
[»] chr3 (5 HSPs)
chr3 (451-535)||(28770120-28770204)
chr3 (266-326)||(49600722-49600782)
chr3 (349-443)||(42314145-42314240)
chr3 (352-422)||(32899641-32899711)
chr3 (452-497)||(52968674-52968719)
[»] scaffold0006 (1 HSPs)
scaffold0006 (362-444)||(109383-109466)
[»] chr2 (3 HSPs)
chr2 (266-326)||(22318530-22318590)
chr2 (463-551)||(35095951-35096037)
chr2 (463-496)||(43081883-43081916)
[»] chr6 (4 HSPs)
chr6 (336-406)||(32250677-32250748)
chr6 (449-499)||(24053364-24053414)
chr6 (230-310)||(6901623-6901704)
chr6 (447-495)||(684098-684146)
[»] chr1 (2 HSPs)
chr1 (451-553)||(49877843-49877945)
chr1 (349-426)||(328317-328395)
[»] scaffold0039 (1 HSPs)
scaffold0039 (349-443)||(93487-93581)
[»] chr4 (3 HSPs)
chr4 (451-503)||(8525631-8525683)
chr4 (463-537)||(21120123-21120197)
chr4 (284-326)||(50977862-50977904)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 444
Target Start/End: Complemental strand, 14811741 - 14811302
Alignment:
Q  6 aacaatataattttgacaggagtattttaatatgatttgacgtgagattaatacaagcatgagcaaagttaacgtcacgggttatctaacaccgtgcgct 105  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14811741 aacaatataattttgacaggagtattttaatatgatttggtgtgagattaatacaagcatgagcaaagttaacgtcacgggttatccaacaccgtgcgct 14811642  T
Q  106 gatctcattcatgacttaacttgggtaataggtgtgggtggctgggtgcacgcttgttagtcaatcctagttactcctccgcagtaccggcggagcaatg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  14811641 gatctcattcatgacttaacttgggtaataggtgtgggtggctgggtgcatgcttgttagtcaatcctagttactcctccgcaatagcggcggagcaatg 14811542  T
Q  206 aagaattttttaaatcagaaatatcaattataattgtcctctacaacttgcagtttttaaaaatatctaatgactttttcattttcaatctcaataaaaa 305  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  14811541 aagaattttttaaatcagaaatatcaattataattatcctctacaacttgcattttttgaaaatatctaatgactttttcattttcaatctcaataaaaa 14811442  T
Q  306 cctctatctttatataagtaaagtagaatgtacttcatacgttcctttttataagcgtagtttacaaaaattacggatattaag-aaagttgttgaagta 404  Q
    ||||| | ||||||||||||||||||||| |||||||||  | |||||||||| |||| |||||||||||  |||||||||||| ||||| |||||||||    
T  14811441 cctctgtttttatataagtaaagtagaatatacttcatatatccctttttataggcgtggtttacaaaaaccacggatattaagaaaagtcgttgaagta 14811342  T
Q  405 attaaattgtctcaaatgcatgtaactattactaaattat 444  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  14811341 attaaattgtctcaaatgcgtgtgactattactaaattat 14811302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 446 - 753
Target Start/End: Complemental strand, 14811277 - 14810972
Alignment:
Q  446 ataatttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattata 545  Q
    |||||||||||||||  ||||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811277 ataatttttcatatatcaagacaaattgatagtattaataaggggtaaatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattata 14811178  T
Q  546 tttagggaaccaatgcatctaaattactactttaatcactctcaattattttgataccattttctt-taaaaataactgttattttgagaaagaatgagt 644  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| |    
T  14811177 tttagggaaccaatgcatctaaattcctactttaatcactctcaattattttgataccattttcttaaaaaaataactgttattttgagacagaatgaat 14811078  T
Q  645 aattnnnnnnnnnnnnnnnnnnnncacgaataaagatgctcatgcaaatcccacaaattttagttcgagccatttagcattattactcaaaatatactcc 744  Q
    | ||                    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||    
T  14811077 acttaaaaaagaagaaaagaaagacacgtataaagatgctcatgcaaatcctacaaattttagttcgagccatttagc---attactcaaaatatactcc 14810981  T
Q  745 cccttcctt 753  Q
    |||||||||    
T  14810980 cccttcctt 14810972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 11892052 - 11891980
Alignment:
Q  350 ctttttataagcgtagtttacaaaaattacggatattaagaaa-gttgttgaagtaattaaattgtctcaaat 421  Q
    ||||||||||| ||||||||||||||| |||  |||||||||| |||||||||||||| ||||||||||||||    
T  11892052 ctttttataagagtagtttacaaaaatcacgagtattaagaaaagttgttgaagtaataaaattgtctcaaat 11891980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 554
Target Start/End: Complemental strand, 11891927 - 11891824
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagaga-tatatttgaaaaaca-agtaaccaatgcatctaagaatttgtatatgagtattatattt 548  Q
    ||||||||| | || ||||||| ||| ||||||||| ||| |||||||  |||| | ||||| |||||||||||||||||||||||| | | ||||||||    
T  11891927 ttttcatatgccaaaacaaattagtaatattaataa-agagtatatttataaaaaagagtaatcaatgcatctaagaatttgtatat-aatcttatattt 11891830  T
Q  549 agggaa 554  Q
    ||||||    
T  11891829 agggaa 11891824  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 26571588 - 26571701
Alignment:
Q  210 attttttaaatcagaaatatcaattataattgtcctctacaacttg-cagttttta-aaaatatctaatgactttttcattttcaatctcaataaaaacc 307  Q
    ||||||||||||| |||||||||||| ||||||||| ||| ||||| || |||||  |||||||| ||||| ||| ||||||||||||||||||||||||    
T  26571588 attttttaaatcaaaaatatcaattacaattgtcctatacgacttgtcatttttttgaaaatatcgaatgattttctcattttcaatctcaataaaaacc 26571687  T
Q  308 tctatctttatata 321  Q
    ||| ||| ||||||    
T  26571688 tctctctatatata 26571701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 12585648 - 12585745
Alignment:
Q  230 caattataattgtcctctacaacttg-cagtttttaaaaatatctaatgactttttcattttcaatctcaataaaaacctctatctttatataagtaa 326  Q
    |||||| ||||||||||||| ||||| ||  ||||  ||||||| ||||| ||| |||||||||||||||||||||| |||| ||| |||||||||||    
T  12585648 caattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctatataagtaa 12585745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 550
Target Start/End: Complemental strand, 45218487 - 45218389
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattatatttag 550  Q
    ||||||||||| |||||||||||||| |||||||||| | |||||||| ||||  |  || |||||||||||| |||||| |||||| | ||||||||||    
T  45218487 ttttcatataccaagacaaattggtaatattaataaggggtatatttggaaaaagatgaatcaatgcatctaaaaatttggatatga-tcttatatttag 45218389  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 463 - 503
Target Start/End: Original strand, 35187505 - 35187545
Alignment:
Q  463 aagacaaattggtagtattaataagagatatatttgaaaaa 503  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  35187505 aagacaaattagtagtattaataagagatatatttggaaaa 35187545  T

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Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 451 - 553
Target Start/End: Original strand, 29892883 - 29892982
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattatatttag 550  Q
    ||||||||||| || |||||||||||||||||||||| | |||||||||||||  ||||| || |||||||| |||||||||||||   |||||||||||    
T  29892883 ttttcatataccaaaacaaattggtagtattaataaggggtatatttgaaaaaagagtaatcactgcatctaggaatttgtatatg---attatatttag 29892979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 451 - 554
Target Start/End: Complemental strand, 8838463 - 8838361
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattatatttag 550  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||| |||||  | ||| |||||||| ||||||||| ||||||| | |||| |||||    
T  8838463 ttttcatatatcaagacaaattggtagtattaataagaggtatatttaaaaaaagaataatcaatgcatttaagaatttatatatga-tcttatgtttag 8838365  T
Q  551 ggaa 554  Q
    ||||    
T  8838364 ggaa 8838361  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 22973009 - 22972912
Alignment:
Q  230 caattataattgtcctctacaacttg-cagtttttaaaaatatctaatgactttttcattttcaatctcaataaaaacctctatctttatataagtaa 326  Q
    |||||| ||||||||||||| ||||| ||  ||||  ||||||| ||||| ||| |||||||||||||||||||||| |||| ||| |||||||||||    
T  22973009 caattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctatatataagtaa 22972912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 534
Target Start/End: Original strand, 41162859 - 41162942
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtata 534  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||||  |||  |||||  ||||||||||  ||||||||||    
T  41162859 ttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgtata 41162942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 537
Target Start/End: Original strand, 30861984 - 30862078
Alignment:
Q  443 atgataatttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatga 537  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||| | |||||  ||||  |||||  |||| |||||  |||||||||||||    
T  30861984 atgataatttttcatataccaaaacaaattggtaatattaataagaggtgtattttgaaaaagagtaataaatgtatctagaaatttgtatatga 30862078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 348 - 443
Target Start/End: Complemental strand, 8838616 - 8838520
Alignment:
Q  348 tcctttttataagcgtagtttacaaaaattacggatattaag-aaagttgttgaagtaattaaattgtctcaaatgcatgtaactattactaaatta 443  Q
    ||||||||||||| ||| ||||| ||||||||  |||||||| ||| |||||| |||||| ||||||| |||||||  | | |||||||||| ||||    
T  8838616 tcctttttataagagtaatttacgaaaattacatatattaagaaaaattgttggagtaataaaattgtttcaaatgtgtatgactattactagatta 8838520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 48030303 - 48030251
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaa 503  Q
    ||||||||| | |||| ||||| |||||||||||||| |||||||||||||||    
T  48030303 ttttcatattccaagataaatttgtagtattaataagggatatatttgaaaaa 48030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 451 - 535
Target Start/End: Complemental strand, 28770204 - 28770120
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatat 535  Q
    ||||||||||| || |||||||| ||||||||||||| ||||||||| |||||  |||||  |||||||||| || |||||||||    
T  28770204 ttttcatataccaaaacaaattgatagtattaataagggatatatttaaaaaaagagtaaataatgcatctaggattttgtatat 28770120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 49600722 - 49600782
Alignment:
Q  266 aaatatctaatgactttttcattttcaatctcaataaaaacctctatctttatataagtaa 326  Q
    ||||||| ||||| ||| |||||||||||||||||||||| |||| | | |||||||||||    
T  49600722 aaatatcgaatgattttctcattttcaatctcaataaaaatctctctttctatataagtaa 49600782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 42314240 - 42314145
Alignment:
Q  349 cctttttataagcgtagtttacaaaaattacggatattaag-aaagttgttgaagtaattaaattgtctcaaatgcatgtaactattactaaatta 443  Q
    |||||||||||| ||| ||||||||||| | |  ||||||| |||||||||| |||||| || ||||| ||||||||||  ||| |||| ||||||    
T  42314240 cctttttataagagtattttacaaaaatcaagagtattaagaaaagttgttggagtaataaatttgtcacaaatgcatgctactgttaccaaatta 42314145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 32899641 - 32899711
Alignment:
Q  352 ttttataagcgtagtttacaaaaattacggatattaagaaagttgttgaagtaattaaattgtctcaaatg 422  Q
    |||||||||  || ||||||||||  ||| ||||||| ||||||||||||||||| || ||||| ||||||    
T  32899641 ttttataagactattttacaaaaaacacgaatattaaaaaagttgttgaagtaataaatttgtcacaaatg 32899711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 52968674 - 52968719
Alignment:
Q  452 tttcatatactaagacaaattggtagtattaataagagatatattt 497  Q
    ||||||||| ||| |||||||| ||||||||||| |||||||||||    
T  52968674 tttcatatattaaaacaaattgatagtattaatatgagatatattt 52968719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 109383 - 109466
Alignment:
Q  362 gtagtttacaaaaattacggatattaag-aaagttgttgaagtaattaaattgtctcaaatgcatgtaactattactaaattat 444  Q
    |||||||||||||||||||||||||||| ||| || ||| |||||| || |||||||||||| |||| | |||||||| |||||    
T  109383 gtagtttacaaaaattacggatattaagaaaatttattggagtaataaatttgtctcaaatgtatgtgattattactagattat 109466  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 22318530 - 22318590
Alignment:
Q  266 aaatatctaatgactttttcattttcaatctcaataaaaacctctatctttatataagtaa 326  Q
    ||||||| ||||| |||  |||||||||||||||||||||||||| ||| |||||||||||    
T  22318530 aaatatcgaatgattttcacattttcaatctcaataaaaacctctctctatatataagtaa 22318590  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 463 - 551
Target Start/End: Original strand, 35095951 - 35096037
Alignment:
Q  463 aagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattatatttagg 551  Q
    |||| |||||||||||||||| ||  | |||||||||||||  ||||| || | ||||||||||||||||||||| | |||||||||||    
T  35095951 aagataaattggtagtattaaaaatgg-tatatttgaaaaaagagtaatcatttcatctaagaatttgtatatga-tcttatatttagg 35096037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 43081883 - 43081916
Alignment:
Q  463 aagacaaattggtagtattaataagagatatatt 496  Q
    ||||||||||| ||||||||||||||||||||||    
T  43081883 aagacaaattgatagtattaataagagatatatt 43081916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 32250677 - 32250748
Alignment:
Q  336 tacttcatacgttcctttttataagcgtagtttacaaaaattacggatatt-aagaaagttgttgaagtaat 406  Q
    |||||||| ||| |||||||||| | |||||||||||||| ||||| |||| || |||||||||||||||||    
T  32250677 tacttcatccgtccctttttataggagtagtttacaaaaaatacgggtattaaaaaaagttgttgaagtaat 32250748  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 499
Target Start/End: Original strand, 24053364 - 24053414
Alignment:
Q  449 atttttcatatactaagacaaattggtagtattaataagagatatatttga 499  Q
    |||||| |||| |||||| |||||| |||||||||||||||||||||||||    
T  24053364 attttttatattctaagataaattgatagtattaataagagatatatttga 24053414  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 6901704 - 6901623
Alignment:
Q  230 caattataattgtcctctacaacttg-cagtttttaaaaatatctaatgactttttcattttcaatctcaataaaaacctct 310  Q
    |||||| ||||||||||||| ||||| ||  ||||  ||||||| ||||| ||| |||||||||||||||||||||| ||||    
T  6901704 caattacaattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctct 6901623  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 447 - 495
Target Start/End: Original strand, 684098 - 684146
Alignment:
Q  447 taatttttcatatactaagacaaattggtagtattaataagagatatat 495  Q
    |||||||||||||| |||||||||||  ||||||||||||||| |||||    
T  684098 taatttttcatatattaagacaaattaatagtattaataagaggtatat 684146  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 451 - 553
Target Start/End: Complemental strand, 49877945 - 49877843
Alignment:
Q  451 ttttcatatactaagacaaattggta-gtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatgagtattatattta 549  Q
    ||||||||| | |||| | ||||||| ||||||||||| | |||||| ||||||  ||||| |||| ||||||| |||||| |||||| |||||||||||    
T  49877945 ttttcatatgccaagatagattggtaagtattaataaggggtatattagaaaaaagagtaatcaatacatctaaaaatttgaatatga-tattatattta 49877847  T
Q  550 ggga 553  Q
    ||||    
T  49877846 ggga 49877843  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 328317 - 328395
Alignment:
Q  349 cctttttataagcgtagtttacaaaaattacggatattaag-aaagttgttgaagtaattaaattgtctcaaatgcatg 426  Q
    |||||||||||| ||| ||||||||||| | |  ||||||| |||||||||  |||||| |||||||| ||||||||||    
T  328317 cctttttataagagtattttacaaaaatcaagagtattaagaaaagttgtttgagtaataaaattgtcacaaatgcatg 328395  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 93581 - 93487
Alignment:
Q  349 cctttttataagcgtagtttacaaaaattacggatattaagaaagttgttgaagtaattaaattgtctcaaatgcatgtaactattactaaatta 443  Q
    |||||||||| | ||||||||||||||| |||| |||||| |||||||||| |||| | || |||||||| |||  ||| || ||||||| ||||    
T  93581 cctttttatatgagtagtttacaaaaatcacgggtattaaaaaagttgttggagtattaaacttgtctcagatgtgtgtgacaattactagatta 93487  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 8525683 - 8525631
Alignment:
Q  451 ttttcatatactaagacaaattggtagtattaataagagatatatttgaaaaa 503  Q
    ||||||||||| ||||||||||| ||||||||||||| | |||||||| ||||    
T  8525683 ttttcatataccaagacaaattgatagtattaataaggggtatatttgcaaaa 8525631  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 537
Target Start/End: Complemental strand, 21120197 - 21120123
Alignment:
Q  463 aagacaaattggtagtattaataagagatatatttgaaaaacaagtaaccaatgcatctaagaatttgtatatga 537  Q
    ||||||||||  ||||||||||||| | |||||||| ||||  ||||| |||| ||||||  |||||||||||||    
T  21120197 aagacaaattattagtattaataaggggtatatttggaaaaagagtaatcaatacatctagaaatttgtatatga 21120123  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 50977862 - 50977904
Alignment:
Q  284 tcattttcaatctcaataaaaacctctatctttatataagtaa 326  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||    
T  50977862 tcattttcaatctcaataaaaacatctctctatatataagtaa 50977904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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