View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_42 (Length: 243)
Name: NF11915_low_42
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 7163115 - 7163330
Alignment:
| Q |
11 |
aagaaaagaataccgagcagggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttatcctaatgacgac |
110 |
Q |
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| T |
7163115 |
aagaaaagaataccgagcagggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttatcctaatgacgac |
7163214 |
T |
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| Q |
111 |
aaggcaagaaagaattgctgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgacttagtccacgactcagattcaaattttttatctaacaa |
210 |
Q |
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| T |
7163215 |
aaggtaagaaagaattgctgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgacttagtccacgactcagactcaaattttttatctaataa |
7163314 |
T |
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| Q |
211 |
attacttatgttgaactt |
228 |
Q |
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| T |
7163315 |
--tacttatgttcaactt |
7163330 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 12703800 - 12703866
Alignment:
| Q |
32 |
gtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttat |
98 |
Q |
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| T |
12703800 |
gtgttggtttggtgaattctctttgtgcagagagtattcatacttaagtttggaagggttgttttat |
12703866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 48517825 - 48517666
Alignment:
| Q |
29 |
agggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttatcctaatgacgacaaggcaagaaagaattgc |
128 |
Q |
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| T |
48517825 |
agggtgttggtttggagagttttctttgtgcaaagagtagtcatacttaagtttgaaagggctgttttatcctggggacgacgaggcaagaaagatctgt |
48517726 |
T |
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| Q |
129 |
tgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgacttagtccacgactcag |
188 |
Q |
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| T |
48517725 |
tgcacaattcaggcagagccgcagaacgtcttaaagagagcgacctagtccgcgactcag |
48517666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 37075569 - 37075516
Alignment:
| Q |
30 |
gggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttg |
83 |
Q |
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| T |
37075569 |
gggtgttggtttggtgagttctctttgtgcatagagtactcatacttaagtttg |
37075516 |
T |
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