View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11915_low_5 (Length: 685)

Name: NF11915_low_5
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11915_low_5
NF11915_low_5
[»] chr3 (24 HSPs)
chr3 (319-671)||(4220849-4221199)
chr3 (6-201)||(4221283-4221478)
chr3 (60-150)||(1610005-1610095)
chr3 (60-164)||(47648996-47649100)
chr3 (53-148)||(29438525-29438620)
chr3 (60-126)||(145487-145553)
chr3 (60-150)||(21662155-21662245)
chr3 (60-164)||(11985286-11985392)
chr3 (61-164)||(24481806-24481909)
chr3 (58-148)||(43615953-43616042)
chr3 (66-149)||(1829593-1829676)
chr3 (59-122)||(42591308-42591370)
chr3 (319-460)||(29438254-29438395)
chr3 (62-120)||(8560022-8560080)
chr3 (65-98)||(19560237-19560270)
chr3 (59-120)||(21434248-21434309)
chr3 (60-136)||(38640143-38640219)
chr3 (63-119)||(48757538-48757594)
chr3 (59-119)||(51818029-51818089)
chr3 (70-120)||(788419-788472)
chr3 (60-99)||(43788859-43788898)
chr3 (175-204)||(788902-788931)
chr3 (59-132)||(19237450-19237523)
chr3 (66-119)||(19269348-19269401)
[»] chr7 (26 HSPs)
chr7 (59-207)||(44629424-44629572)
chr7 (60-164)||(12467574-12467678)
chr7 (63-149)||(12640304-12640390)
chr7 (59-149)||(40954850-40954940)
chr7 (59-147)||(19362677-19362765)
chr7 (60-149)||(12820372-12820461)
chr7 (60-164)||(21267791-21267895)
chr7 (60-148)||(31642864-31642952)
chr7 (60-203)||(26074929-26075071)
chr7 (60-203)||(26098716-26098858)
chr7 (349-425)||(44629245-44629321)
chr7 (67-130)||(9698090-9698153)
chr7 (64-135)||(21510268-21510339)
chr7 (328-420)||(8061292-8061384)
chr7 (60-119)||(27348212-27348271)
chr7 (335-460)||(19362400-19362525)
chr7 (380-464)||(47520480-47520564)
chr7 (62-98)||(44598695-44598731)
chr7 (60-120)||(47535444-47535504)
chr7 (60-99)||(7356231-7356270)
chr7 (60-119)||(38826223-38826282)
chr7 (60-106)||(8061499-8061545)
chr7 (60-98)||(18774829-18774867)
chr7 (60-129)||(30682585-30682654)
chr7 (63-99)||(34535261-34535297)
chr7 (175-207)||(44598630-44598662)
[»] chr5 (25 HSPs)
chr5 (67-207)||(32632997-32633137)
chr5 (60-165)||(16717159-16717264)
chr5 (60-129)||(19645448-19645517)
chr5 (62-163)||(15107759-15107859)
chr5 (60-120)||(28866167-28866226)
chr5 (66-120)||(18768229-18768283)
chr5 (59-119)||(14316976-14317035)
chr5 (60-114)||(38054318-38054372)
chr5 (63-120)||(4306880-4306937)
chr5 (60-129)||(24441801-24441870)
chr5 (59-120)||(32151180-32151241)
chr5 (59-119)||(2985698-2985758)
chr5 (59-119)||(15497687-15497747)
chr5 (60-99)||(29986764-29986803)
chr5 (60-98)||(16633626-16633664)
chr5 (60-130)||(34731849-34731919)
chr5 (60-98)||(37022786-37022824)
chr5 (59-129)||(43541206-43541276)
chr5 (60-129)||(4819833-4819902)
chr5 (347-464)||(15107482-15107598)
chr5 (59-120)||(32274979-32275040)
chr5 (66-98)||(8209925-8209957)
chr5 (60-116)||(13760335-13760391)
chr5 (59-119)||(15917280-15917340)
chr5 (60-120)||(36560798-36560858)
[»] chr8 (20 HSPs)
chr8 (60-150)||(27084263-27084353)
chr8 (61-148)||(24887989-24888076)
chr8 (60-160)||(12826570-12826670)
chr8 (60-132)||(24643625-24643697)
chr8 (61-148)||(25431054-25431141)
chr8 (59-149)||(33011815-33011905)
chr8 (59-136)||(8789796-8789873)
chr8 (60-98)||(24915664-24915702)
chr8 (59-120)||(35890910-35890971)
chr8 (60-129)||(35958799-35958868)
chr8 (59-119)||(5643232-5643292)
chr8 (60-116)||(30732007-30732063)
chr8 (59-99)||(35396574-35396614)
chr8 (60-119)||(5572543-5572602)
chr8 (60-131)||(10890640-10890711)
chr8 (60-129)||(13280122-13280189)
chr8 (350-467)||(27084435-27084551)
chr8 (58-98)||(46960-47000)
chr8 (59-98)||(16978298-16978338)
chr8 (60-120)||(21519578-21519638)
[»] chr1 (20 HSPs)
chr1 (62-148)||(28702233-28702319)
chr1 (60-133)||(14876784-14876857)
chr1 (61-149)||(23826182-23826270)
chr1 (60-164)||(34870603-34870707)
chr1 (59-164)||(50432531-50432636)
chr1 (59-164)||(29773681-29773786)
chr1 (60-147)||(52453677-52453764)
chr1 (63-164)||(49289899-49290000)
chr1 (61-147)||(171149-171234)
chr1 (63-129)||(29663840-29663906)
chr1 (377-462)||(23825912-23825997)
chr1 (60-114)||(10778453-10778507)
chr1 (62-119)||(44352232-44352288)
chr1 (67-135)||(15554460-15554528)
chr1 (60-120)||(42138592-42138652)
chr1 (60-98)||(3712819-3712857)
chr1 (103-148)||(4808524-4808569)
chr1 (58-98)||(25244886-25244926)
chr1 (60-120)||(44091217-44091276)
chr1 (60-116)||(47476556-47476612)
[»] chr6 (10 HSPs)
chr6 (63-204)||(32786611-32786751)
chr6 (60-149)||(20612960-20613049)
chr6 (60-150)||(6719788-6719875)
chr6 (59-148)||(14533759-14533845)
chr6 (89-135)||(32125919-32125965)
chr6 (59-119)||(2753680-2753740)
chr6 (60-116)||(33582820-33582876)
chr6 (60-98)||(30590215-30590253)
chr6 (62-119)||(13647444-13647501)
chr6 (59-119)||(34385163-34385223)
[»] chr4 (32 HSPs)
chr4 (60-131)||(50070176-50070247)
chr4 (60-164)||(29924525-29924629)
chr4 (60-128)||(33226277-33226345)
chr4 (60-149)||(49497649-49497738)
chr4 (61-164)||(19097196-19097299)
chr4 (65-132)||(47383878-47383945)
chr4 (60-142)||(26494694-26494776)
chr4 (67-130)||(13564467-13564530)
chr4 (63-149)||(46851865-46851949)
chr4 (65-128)||(52489818-52489881)
chr4 (59-149)||(30828547-30828636)
chr4 (60-142)||(37986928-37987010)
chr4 (60-127)||(2930316-2930383)
chr4 (60-115)||(31523173-31523228)
chr4 (63-164)||(52797632-52797733)
chr4 (60-131)||(13442198-13442267)
chr4 (59-119)||(50720128-50720188)
chr4 (63-116)||(37818674-37818727)
chr4 (58-129)||(29132908-29132979)
chr4 (60-119)||(49908435-49908494)
chr4 (62-120)||(29096400-29096458)
chr4 (60-129)||(14968137-14968206)
chr4 (63-119)||(5517146-5517202)
chr4 (59-119)||(6211699-6211759)
chr4 (59-119)||(12679888-12679948)
chr4 (114-149)||(2930401-2930436)
chr4 (63-117)||(17555277-17555331)
chr4 (335-413)||(46852096-46852174)
chr4 (60-129)||(27993623-27993692)
chr4 (59-116)||(40704918-40704975)
chr4 (59-99)||(53436540-53436580)
chr4 (67-139)||(54085453-54085525)
[»] chr2 (16 HSPs)
chr2 (60-164)||(4580554-4580658)
chr2 (60-164)||(38972215-38972319)
chr2 (61-150)||(4056207-4056296)
chr2 (59-130)||(9615681-9615753)
chr2 (60-149)||(38575567-38575655)
chr2 (58-142)||(30076216-30076300)
chr2 (60-149)||(1315149-1315238)
chr2 (60-129)||(6590403-6590472)
chr2 (63-166)||(5890605-5890708)
chr2 (60-116)||(31162322-31162377)
chr2 (60-99)||(12060094-12060133)
chr2 (69-120)||(17302996-17303047)
chr2 (61-120)||(42834675-42834734)
chr2 (319-437)||(14735663-14735781)
chr2 (60-130)||(32399198-32399268)
chr2 (63-116)||(31266565-31266618)
[»] scaffold0325 (1 HSPs)
scaffold0325 (60-133)||(19761-19834)
[»] scaffold0060 (1 HSPs)
scaffold0060 (60-147)||(35908-35996)
[»] scaffold0057 (1 HSPs)
scaffold0057 (59-119)||(63813-63873)
[»] scaffold0015 (1 HSPs)
scaffold0015 (59-129)||(64721-64791)
[»] scaffold0006 (1 HSPs)
scaffold0006 (60-98)||(230611-230649)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 319 - 671
Target Start/End: Complemental strand, 4221199 - 4220849
Alignment:
Q  319 tgaaccagtaaccttaagcaatttacgacaccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacct 418  Q
    |||||||| ||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||    
T  4221199 tgaaccagcaacttttagcaatttacgacaccccatttccactgcaacagctgaaatctaattgatttatgacacctaatacaaaatataaggaaaacct 4221100  T
Q  419 gagggatatcatggcccctacatgtccctaaagagatccgccactggttgtgcacaacgagtagcaatgttttaccctaaaagccaaatgcatatcattg 518  Q
    | |||||  |||||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  4221099 gggggatgccatggcccctgcctgtccctaaagagatctgccactggttgtgcacatcgagtagcaatgttttaccctaaaagccaaatgcatattattg 4221000  T
Q  519 catggaatttgataacttattaagtgatatttctataaatactttcagggttgcatatattctatttcaagaccctcaaagtgtcgatagggctctcctc 618  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4220999 catgg--tttgataacttattaagtgatatttctataaatactttcagggttgcatatattctatctcaagaccctcaaagtgtcgatagggctctcctc 4220902  T
Q  619 gaactcaatggaacaagatatggtggtgaatgtttgagaaggggttatatttg 671  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  4220901 gaactcaatggaacaagatatggtggtgactttttgagaaggggttatatttg 4220849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 4221478 - 4221283
Alignment:
Q  6 agaagcatagggtatgtttcttagaatttcatttagattccttttagttgtgcacagtggcggatcttgagttaatttgttgggggtgccaaacttctat 105  Q
    |||||||  |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4221478 agaagcaatgggtctgtttcttagaatctcatttagattctttttagttgtgcacagtggcggatcttgaattaatttgttgggggtgccaaacttctat 4221379  T
Q  106 ggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggtataannnnnnngaaaggagcaagaggatgtgggttcgaa 201  Q
    | |||||||||||||  |||||||||||||| |||||||||||| | ||||||||||||||       |||| |||||||||||||||||||||||    
T  4221378 gaaatatatattaaacagtttcaagaagtaataataattaataaccgacctagtggtataaattttttgaaaagagcaagaggatgtgggttcgaa 4221283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 1610095 - 1610005
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 150  Q
    |||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  1610095 cagtggcggatcttgacttaaattgctgggggtgccaaacttttatggaatatatattaaatggtttcaagaagtagtaataattaataat 1610005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 47648996 - 47649100
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||   || ||||||||||||||   ||||||    
T  47648996 cagtggcggatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatggtttcaagttatatcaataattaataattggcctagt 47649095  T
Q  160 ggtat 164  Q
    |||||    
T  47649096 ggtat 47649100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 29438620 - 29438525
Alignment:
Q  53 ttgtgcacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||||| |||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||| | || ||||||||||||    
T  29438620 ttgtgcgcagtggcgaatcttgagttaatttgttgggagtgtcaaacttttatggaatatatattaactggtttcaagtattatcaataattaata 29438525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 145553 - 145487
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggttt 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  145553 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggttt 145487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 21662155 - 21662245
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 150  Q
    ||||||||||||||||||||| ||  |||| |||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  21662155 cagtggcggatcttgagttaaattcctgggagtgccaaatttctatggaatatatattaaatggtttcaagatatatcaataattaataat 21662245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 11985286 - 11985392
Alignment:
Q  60 cagtggcggatcttgagttaa--tttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaaccta 157  Q
    |||||||||||||||||||||  ||| ||||| |||||||| |||||| |||||||||||||||||||||||||  || ||||||||||||||   ||||    
T  11985286 cagtggcggatcttgagttaacttttcttgggagtgccaaatttctattgaatatatattaaatggtttcaagatatatcaataattaataattggccta 11985385  T
Q  158 gtggtat 164  Q
    |||||||    
T  11985386 gtggtat 11985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 24481806 - 24481909
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtg 160  Q
    |||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||  || || ||| |||||||   |||||||    
T  24481806 agtggcggatcttgagttaaatttttgagggtgtcaaacttctatggaatatatattaaatggtttcaagatatatcagtaaataataattggcctagtg 24481905  T
Q  161 gtat 164  Q
    ||||    
T  24481906 gtat 24481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 43616042 - 43615953
Alignment:
Q  58 cacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | | |||||| | || ||||||||||||    
T  43616042 cacagtggcggatcttgagttaatttgttgggggtgtcaaacttttatggaatatatattaactag-ttcaagtattatcaataattaata 43615953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 1829676 - 1829593
Alignment:
Q  66 cggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||||||||| ||||| || |||||| |||||||||||||||||||||| |||  |||| ||||| ||||||||| ||||||    
T  1829676 cggatcttgagtaaatttttttggggtgtcaaacttctatggaatatatatcaaacagttttaagaactaacaataaataataa 1829593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 42591370 - 42591308
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatg 122  Q
    |||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||    
T  42591370 acagtggcggatcttgagttaatttgtt-gggatgttaaacttctatggaatatatattaaatg 42591308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 460
Target Start/End: Complemental strand, 29438395 - 29438254
Alignment:
Q  319 tgaaccagtaaccttaagcaatttacgacaccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacct 418  Q
    ||||||||||||||  ||||||| | |  ||||||||||||||||| ||||| || || |||||||||   || |||||||||| |||||||||||   |    
T  29438395 tgaaccagtaacctagagcaattcatggtaccccctttccactgcaccagctcaattcaaattgatattatactcctaatatagtatataaggaaacttt 29438296  T
Q  419 gagggatatcatggcccctacatgtccctaaagagatccgcc 460  Q
    | |||||| |||||| ||| | || ||| |||||||||||||    
T  29438295 gggggataccatggcacctgcctgcccccaaagagatccgcc 29438254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 8560022 - 8560080
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| ||| |||||||||    
T  8560022 gtggcggatcttgagtaaatttgttgggggtgccaaaccactatgaaatgtatattaaa 8560080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 19560237 - 19560270
Alignment:
Q  65 gcggatcttgagttaatttgttgggggtgccaaa 98  Q
    ||||||||||||||||||||||||||||||||||    
T  19560237 gcggatcttgagttaatttgttgggggtgccaaa 19560270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 21434309 - 21434248
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||| ||||||||||||| ||| | |||||| ||||| ||||||| |||||||||||||    
T  21434309 acagtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaaa 21434248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 38640219 - 38640143
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaa 136  Q
    |||||||||||||||| ||| ||| |||||||| || ||||  ||||||||||||||| ||  |||||||| |||||    
T  38640219 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattcaaatgtttcaagtagtaa 38640143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 48757538 - 48757594
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  48757538 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 48757594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 51818029 - 51818089
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| ||| |||| | ||| ||||||| ||||||||||||    
T  51818029 acagtggcggatcttgagttattttcttgagggtacaaaaattctatgaaatatatattaa 51818089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 788419 - 788472
Alignment:
Q  70 tcttgagttaatttgttgg---gggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||||||||||||| |   ||||||||||||| ||||||||||||||||||    
T  788419 tcttgagttaatttgtttgttggggtgccaaacttttatggaatatatattaaa 788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 43788859 - 43788898
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  43788859 cagtggcggatcttgagtaaatttcttgggggtgccaaac 43788898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 788902 - 788931
Alignment:
Q  175 aaaggagcaagaggatgtgggttcgaatcc 204  Q
    ||||||||||||||||||||||||||||||    
T  788902 aaaggagcaagaggatgtgggttcgaatcc 788931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 19237523 - 19237450
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaa 132  Q
    ||||||| ||||||||||||| ||| |||||||| |||||  | |||| |||||||||||| | |||| |||||    
T  19237523 acagtggtggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaagttgtttgaagaa 19237450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 19269348 - 19269401
Alignment:
Q  66 cggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    |||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  19269348 cggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 19269401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 44629572 - 44629424
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctag 158  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||   ||||||    
T  44629572 acagtggcggatcttgagttgatttgtagggggtgccaaacttctatggaatatatattaaacggtttcaagaagatacaataattagtaactgacctag 44629473  T
Q  159 tggtataannnnnnngaaaggagcaagaggatgtgggttcgaatcccct 207  Q
    ||||||||       |||| || |||||||||||||||| |||||||||    
T  44629472 tggtataaattgtttgaaaagaacaagaggatgtgggtttgaatcccct 44629424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 12467574 - 12467678
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || || |||| |||||||| || ||||||    
T  12467574 cagtggcggatcttgagttaaattgttgggggtgccaaacatatatggaatatatattaaatggtttcaaaaaatatcaattattaataaccatcctagt 12467673  T
Q  160 ggtat 164  Q
    |||||    
T  12467674 ggtat 12467678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 12640304 - 12640390
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | | | ||||||||||||||||    
T  12640304 tggcggatcttgagttaatttgtcgggggtgccaaacttttatggaatatatattaaatggttttacgcattaacaataattaataa 12640390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 40954850 - 40954940
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||| || |||| ||||||||    
T  40954850 acagtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattattaataa 40954940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 19362765 - 19362677
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||  ||||||||||    
T  19362765 acagtggcggatcttgagttattttgttgggggtgccaaacttttatggaatatatattaactggtttcaagtattattaataattaat 19362677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 12820372 - 12820461
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    ||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||| || |||| ||| ||||    
T  12820372 cagtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattatttataa 12820461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 21267895 - 21267791
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    |||||||||||||||| |||| || |||||||||||||| |||||| ||||||||||||||||||||||||   || ||||||||||||||   ||||||    
T  21267895 cagtggcggatcttgaattaaattcttgggggtgccaaatttctatagaatatatattaaatggtttcaagttatatcaataattaataattggcctagt 21267796  T
Q  160 ggtat 164  Q
    |||||    
T  21267795 ggtat 21267791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 31642952 - 31642864
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| | ||  |||||||||||    
T  31642952 cagtggcagatcttgagttaatttgttggggatgccaaacttttatggaatatatattaactggtttcaagtattattaataattaata 31642864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 26074929 - 26075071
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    |||||||||||||| ||| ||||| |||||  || |||| | |||||||||||||||||||||||||||||||||| |||||||| |||| |  ||||||    
T  26074929 cagtggcggatcttaagtaaattttttggga-tgtcaaattcctatggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagt 26075027  T
Q  160 ggtataannnnnnngaaaggagcaagaggatgtgggttcgaatc 203  Q
    |||||||        |||||||||||||| |||||||| |||||    
T  26075028 ggtataaatccttttaaaggagcaagagggtgtgggtttgaatc 26075071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 26098716 - 26098858
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    |||||||||||||| ||| ||||| |||||  || |||| | |||||||||||||||||||||||||||||||||| |||||||| |||| |  ||||||    
T  26098716 cagtggcggatcttaagtaaattttttggga-tgtcaaattcctatggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagt 26098814  T
Q  160 ggtataannnnnnngaaaggagcaagaggatgtgggttcgaatc 203  Q
    |||||||        |||||||||||||| |||||||| |||||    
T  26098815 ggtataaatccttttaaaggagcaagagggtgtgggtttgaatc 26098858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 44629321 - 44629245
Alignment:
Q  349 ccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacctgagggat 425  Q
    |||||||||||||||||||||  |||| |||||||||||  ||||||||||||| |||||||||||||||| |||||    
T  44629321 ccccctttccactgcaacagccgaaatttaattgatataatacacctaatatagtatataaggaaaacctgggggat 44629245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 9698090 - 9698153
Alignment:
Q  67 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 130  Q
    |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  9698090 ggatcttgagttaatttgttggaggtgcaaaaattttatggaatatatattaaatggtttcaag 9698153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 21510339 - 21510268
Alignment:
Q  64 ggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagta 135  Q
    ||||||||||||||  |||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||    
T  21510339 ggcggatcttgagtatatttgttgggggtgtcaaaccactatgaaatatatattaaatggtttcaagaagta 21510268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 328 - 420
Target Start/End: Complemental strand, 8061384 - 8061292
Alignment:
Q  328 aaccttaagcaatttacgacaccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacctga 420  Q
    |||||| ||||||||| |  |||| ||||||||||||||| | ||||||| |||||||||  ||||||||||||| |||||  ||||||||||    
T  8061384 aacctttagcaatttatggtaccctctttccactgcaacatccaaaatctgattgatataatacacctaatatagtatatatagaaaacctga 8061292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 27348271 - 27348212
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    |||| ||||||||||||| |||||||||||||||||||| || |||| ||||||||||||    
T  27348271 cagtagcggatcttgagtaaatttgttgggggtgccaaaattttatgaaatatatattaa 27348212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 460
Target Start/End: Complemental strand, 19362525 - 19362400
Alignment:
Q  335 agcaatttacgacaccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacctgagggatatcatggcc 434  Q
    ||||||||||||  |||||||||||||||| ||||| || ||  ||||||||   || |||||||||| |||||||||||   || |||||| ||||||     
T  19362525 agcaatttacgatcccccctttccactgcagcagctcaattcagattgatattatactcctaatatagtatataaggaaactttgggggataccatggca 19362426  T
Q  435 cctacatgtccctaaagagatccgcc 460  Q
    ||| | || ||| |||||||||||||    
T  19362425 cctgcctgcccccaaagagatccgcc 19362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 464
Target Start/End: Original strand, 47520480 - 47520564
Alignment:
Q  380 ttgatatatgacacctaatatagaatataaggaaaacctgagggatatcatggcccctacatgtccctaaagagatccgccactg 464  Q
    ||||||||  ||| ||||||||| |||||| |||||| || ||||| ||||||||||  | ||||||| ||||||||||||||||    
T  47520480 ttgatataatacatctaatatagtatataacgaaaacttgggggatgtcatggccccagcctgtccctgaagagatccgccactg 47520564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 44598731 - 44598695
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    ||||||||||||||||||||||||| |||||||||||    
T  44598731 gtggcggatcttgagttaatttgttaggggtgccaaa 44598695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 47535504 - 47535444
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||| ||| ||| |||||||| || ||||  ||||||||||||||||||    
T  47535504 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattaaa 47535444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 7356270 - 7356231
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  7356270 cagtggcggatcttgagtaaatttattgggggtgccaaac 7356231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 38826223 - 38826282
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    |||||||||||||||||||| ||| | | |||| ||||| ||||||| ||||||||||||    
T  38826223 cagtggcggatcttgagttattttctcgagggtaccaaaattctatgaaatatatattaa 38826282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 8061545 - 8061499
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatg 106  Q
    ||||| || |||||||||||||||||||| |||| ||||||||||||    
T  8061545 cagtgacgtatcttgagttaatttgttggaggtgtcaaacttctatg 8061499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 18774867 - 18774829
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  18774867 cagtggcggatcttgagtaattttgttgggggtgccaaa 18774829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 30682654 - 30682585
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    ||||||| |||||||||||| |||||||| |||||||||  | | ||||||| ||||||||  |||||||    
T  30682654 cagtggcagatcttgagttattttgttggaggtgccaaatatttgtggaataaatattaaacagtttcaa 30682585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 34535297 - 34535261
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  34535297 tggcggatcttgagtaaatttattgggggtgccaaac 34535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 44598662 - 44598630
Alignment:
Q  175 aaaggagcaagaggatgtgggttcgaatcccct 207  Q
    ||||||||||||||| |||||||||||||||||    
T  44598662 aaaggagcaagaggaagtgggttcgaatcccct 44598630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 32632997 - 32633137
Alignment:
Q  67 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggtataa 166  Q
    |||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||| |   ||||||||||||    
T  32632997 ggatattgagttattttgttgggggtgccaatcatctatgtaatatatattaaacggtttcaagaagtaacaataattaataaccggtctagtggtataa 32633096  T
Q  167 nnnnnnngaaaggagcaagaggatgtgggttcgaatcccct 207  Q
           ||||| |||||||| |||||||||||||||||||    
T  32633097 attgtttgaaagaagcaagagaatgtgggttcgaatcccct 32633137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 16717264 - 16717159
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  | ||||| |  |||||||||| | ||||    
T  16717264 cagtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggtatcaaatattaacagtgtttaataatcagcttagt 16717165  T
Q  160 ggtata 165  Q
    ||||||    
T  16717164 ggtata 16717159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 19645517 - 19645448
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19645517 cagtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggtatcaa 19645448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 15107859 - 15107759
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtgg 161  Q
    |||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||| |  || ||||||||||||| || | ||||||    
T  15107859 gtggcggatcttcaattaatttgttgggg-tgtcaaacttctatggaatatatattaaatggtttcaatagatatcaataattaataaccatcttagtgg 15107761  T
Q  162 ta 163  Q
    ||    
T  15107760 ta 15107759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 28866167 - 28866226
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  28866167 cagtggcggatcttgagtaaattttttgggg-tgccaaacttctatggaatatatattaaa 28866226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 18768229 - 18768283
Alignment:
Q  66 cggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||| | ||||| |||||||||||||||||| |||||||||||||||||    
T  18768229 cggatcttgaataaattttttgggggtgccaaacttccatggaatatatattaaa 18768283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 14317035 - 14316976
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||    
T  14317035 acagtggcggatcttgagttatttttttgggg-tgccaaaattctatgaaatatatattaa 14316976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 38054372 - 38054318
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatat 114  Q
    |||||||||||||||||| |||||||||||| ||||||||| | ||| |||||||    
T  38054372 cagtggcggatcttgagtaaatttgttggggatgccaaactaccatgaaatatat 38054318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 4306880 - 4306937
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| |||||||||||||    
T  4306880 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaaa 4306937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 24441801 - 24441870
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  24441801 cagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 24441870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 32151180 - 32151241
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||||||||||||| ||| ||| ||||||||||| ||||  ||||||||||||| ||||    
T  32151180 acagtggcggatcttgacttattttcttgggggtgccgaactattatggaatatatactaaa 32151241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 2985758 - 2985698
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| |||||||| |||||  | |||| ||||||||||||    
T  2985758 acagtggcggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaa 2985698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 15497687 - 15497747
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| |  ||||| ||||| ||||||| ||||||||||||    
T  15497687 acagtggcggatcttgagttattttctcaggggtaccaaaattctatgaaatatatattaa 15497747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 29986803 - 29986764
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  29986803 cagtggcggatcttgagtaaatttattgggggtgccaaac 29986764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 16633626 - 16633664
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  16633626 cagtggcggatcttgagtaattttgttgggggtgccaaa 16633664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 34731919 - 34731849
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 130  Q
    |||||||||||||||| ||| ||| |||||||| || ||||  ||||||||||||||| ||  ||||||||    
T  34731919 cagtggcggatcttgacttattttcttgggggtaccgaactattatggaatatatattcaaacgtttcaag 34731849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 37022786 - 37022824
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  37022786 cagtggcggatcttgagtttatttcttgggggtgccaaa 37022824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 43541276 - 43541206
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    ||||||||||||||||||| | ||||||| ||||||||||  || || ||||||||| ||||  |||||||    
T  43541276 acagtggcggatcttgagtaattttgttgagggtgccaaatatcgatagaatatataataaacagtttcaa 43541206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 4819902 - 4819833
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||| | ||||||||||||| ||||  || || ||||||||| ||||  |||||||    
T  4819902 cagtggcggatcttgagtaattttgttgggggtgtcaaatatcgatagaatatataataaacagtttcaa 4819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 464
Target Start/End: Complemental strand, 15107598 - 15107482
Alignment:
Q  347 caccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacctgagggatatcatggcccctacatgtccc 446  Q
    |||||||||||||||||| |||| | ||||| ||||||| |  ||| |||||||   |||||||| ||||||| |||||  ||||||||| ||  |||||    
T  15107598 caccccctttccactgcaccagccataatct-attgataaactacaactaatattctatataagggaaacctgggggatgacatggcccccaccagtccc 15107500  T
Q  447 taaagagatccgccactg 464  Q
    | ||| |||| |||||||    
T  15107499 tgaagcgatctgccactg 15107482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 32274979 - 32275040
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||||||||||||||||  ||| |||||| |||||||| | | || |||||||||||||    
T  32274979 acagtggcggatcttgagtttttttcttggggatgccaaacatttttgaaatatatattaaa 32275040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 8209957 - 8209925
Alignment:
Q  66 cggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||||||||||||||| ||||    
T  8209957 cggatcttgagttaatttgttgggggtgtcaaa 8209925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 13760335 - 13760391
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||||||||||||||| | |||||||| ||||||||||| |  |||| |||||||||    
T  13760335 cagtggcggatcttgattaaatttgttcggggtgccaaaatggtatgtaatatatat 13760391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 15917340 - 15917280
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||| ||||||||||||| ||| | |||||| ||||| ||||||| |||||| |||||    
T  15917340 acagtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatacattaa 15917280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 36560858 - 36560798
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||| ||| ||| || ||||| ||||||   ||||||||||||||||||    
T  36560858 cagtggcggatcttgatttattttcttaggggtaccaaacagttatggaatatatattaaa 36560798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 27084263 - 27084353
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 150  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | |||||||||||||||||    
T  27084263 cagtggcgaatcttgagttaatttgttgggggtgccaaacttttatggaatatatatcaaatggttttaagtattaacaataattaataat 27084353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 24887989 - 24888076
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| | || ||||||||||||    
T  24887989 agtggcggatcttgagttaatttgttgggggtgccaaaattttatggaatatatattaactggtttcaagtattatcaataattaata 24888076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 12826570 - 12826670
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    |||||| ||||||||||||||||||||| ||||| | || ||||||  ||||||||||||| ||||||| |||| |||||||| ||||||||  ||||||    
T  12826570 cagtggtggatcttgagttaatttgttgcgggtgtcgaaattctataaaatatatattaaacggtttcatgaagcaacaataactaataatcggcctagt 12826669  T
Q  160 g 160  Q
    |    
T  12826670 g 12826670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 24643625 - 24643697
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaa 132  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||||    
T  24643625 cagtggcggatcttgacttaattttttgggggtgccaaatttctacgtaatatatattaactggtttcaagaa 24643697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 25431141 - 25431054
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||||||||| |||||||||||||| |||||||||||  || ||||||||||||||||| ||||||||||   || ||||||||||||    
T  25431141 agtggcggattttgagttaatttgtcgggggtgccaatattttatggaatatatattaactggtttcaagtgttatcaataattaata 25431054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 33011815 - 33011905
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||| |||||||||| | ||||||||||||||  ||||||||||||||||||||||||||  |||| ||||| |||||| || ||||||    
T  33011815 acagtgacggatcttgaataaatttgttgggggtatcaaacttctatggaatatatattaaacagttttaagaaataacaacaaataataa 33011905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 8789873 - 8789796
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaa 136  Q
    ||||||||||||||||| ||| ||| |||| |||||||||||  ||||||||||||||| ||  |||||||| |||||    
T  8789873 acagtggcggatcttgacttattttcttggtggtgccaaactattatggaatatatattcaaatgtttcaagtagtaa 8789796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 24915664 - 24915702
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24915664 cagtggcggatcttgagttattttgttgggggtgccaaa 24915702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 35890910 - 35890971
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||| ||||||||| ||| ||| ||||||||||| ||||  ||||||||||||||||||    
T  35890910 acagtggtggatcttgacttattttcttgggggtgccgaactattatggaatatatattaaa 35890971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 35958799 - 35958868
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  35958799 cagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 35958868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 5643232 - 5643292
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||| ||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  5643232 acagtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 5643292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 30732007 - 30732063
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||||||||||||||| | ||| |||||||||||||||| || |||| |||||||||    
T  30732007 cagtggcggatcttgattaaatctgttgggggtgccaaaattgtatgtaatatatat 30732063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 35396614 - 35396574
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  35396614 acagtggcggatcttgagtgaatttattgggggtgccaaac 35396574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 5572543 - 5572602
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||  || ||| |||||||||||||| || |||| ||||||||||||    
T  5572543 cagtggcggatcttgaaatattttattgggggtgccaaaattgtatgaaatatatattaa 5572602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 10890711 - 10890640
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaaga 131  Q
    ||||||||||||||||  || ||| |||||||||||| | || |||| |||||||||||| | |||||||||    
T  10890711 cagtggcggatcttgaaatattttcttgggggtgccagaattgtatgaaatatatattaagttgtttcaaga 10890640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 13280189 - 13280122
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    ||||||||||| |||||||| ||||||  |||| |||||||| |||| |||||||||||||  |||||||    
T  13280189 cagtggcggattttgagttattttgtt--gggtaccaaacttttatgaaatatatattaaactgtttcaa 13280122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 467
Target Start/End: Original strand, 27084435 - 27084551
Alignment:
Q  350 cccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacctgagggatatcatggcccctacatgtccctaa 449  Q
    |||||| |||||||||| ||||||  ||| |||| |||  ||||||||||||| |||||||||||   || |||||  |||||| ||| | |  ||| ||    
T  27084435 ccccttaccactgcaac-gctaaatcctagttgaaataatacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaa 27084533  T
Q  450 agagatccgccactggtt 467  Q
    ||||||||||||||||||    
T  27084534 agagatccgccactggtt 27084551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 47000 - 46960
Alignment:
Q  58 cacagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  47000 cacagtggcggatcttaagttattttgttgggggtgtcaaa 46960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 16978338 - 16978298
Alignment:
Q  59 acagtggcggatcttgagttaa-tttgttgggggtgccaaa 98  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  16978338 acagtggcggatcttgagttaattttgttgggggtaccaaa 16978298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 21519638 - 21519578
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||| ||| ||| |||| ||| || ||||  ||||||||||||||||||    
T  21519638 cagtggcggatcttgacttattttcttggaggtaccgaactattatggaatatatattaaa 21519578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 28702233 - 28702319
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | || ||||||||||||    
T  28702233 gtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatatttaatggtttcaagtattatcaataattaata 28702319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 14876784 - 14876857
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaag 133  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14876784 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggtttcaagaag 14876857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 23826270 - 23826182
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  23826270 agtggcagatcttgagttaacttattgtgggtgccaaacttctatggaatatatattaaacgatttcaagaagtaacaataattaataa 23826182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 34870707 - 34870603
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    |||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||  | |||||    
T  34870707 cagtggtggatcttgagtaaaattgttgggggtgtcaaacttctatggaatatatattgaatgatttcaagaattaacaataattaataattgatctagt 34870608  T
Q  160 ggtat 164  Q
    |||||    
T  34870607 ggtat 34870603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 50432636 - 50432531
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctag 158  Q
    ||||| |||||||||||||||| |||||||||||||||||  | ||||||||||||||||||||||||||| || || |||| |||||||| || |||||    
T  50432636 acagttgcggatcttgagttaaattgttgggggtgccaaatatatatggaatatatattaaatggtttcaaaaaatatcaattattaataaccatcctag 50432537  T
Q  159 tggtat 164  Q
    ||||||    
T  50432536 tggtat 50432531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 29773786 - 29773681
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctag 158  Q
    |||||| || |||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||   || ||||||||||||||  ||||||    
T  29773786 acagtgacgaatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatgatttcaagttatatcaataattaataattgacctag 29773687  T
Q  159 tggtat 164  Q
    ||||||    
T  29773686 tggtat 29773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 52453677 - 52453764
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 147  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| | || |||||||||||    
T  52453677 cagtgacggattttgagttaatttgttgggggtgccaaacttttatggaatatatattaactggtttaaagtattatcaataattaat 52453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 49290000 - 49289899
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 162  Q
    |||||||||||||||||| ||||||| |||||||||  | |||| |||||||||||||||||||||| || || |||| |||| |||||| |||||||||    
T  49290000 tggcggatcttgagttaaattgttggaggtgccaaatatatatgaaatatatattaaatggtttcaaaaaatatcaattattattaatcatcctagtggt 49289901  T
Q  163 at 164  Q
    ||    
T  49289900 at 49289899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 171234 - 171149
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 147  Q
    |||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||| |||||||  | ||||||||||||||    
T  171234 agtggcggatcttgagttaatttgttggga-tgccaaacctttatggaatatatattaaattgtttcaaatattaacaataattaat 171149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 29663840 - 29663906
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||    
T  29663840 tggcggatcttgagttaatttgctgggggtgccaaacttttatggaatatatattatatggtatcaa 29663906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 462
Target Start/End: Complemental strand, 23825997 - 23825912
Alignment:
Q  377 taattgatatatgacacctaatatagaatataaggaaaacctgagggatatcatggcccctacatgtccctaaagagatccgccac 462  Q
    |||||| ||||  ||||||||||||| |||||| |||||||||  ||||  |||||||||| | ||||||||||||||||||||||    
T  23825997 taattggtataatacacctaatatagtatataaagaaaacctggaggatgacatggcccctgcttgtccctaaagagatccgccac 23825912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 10778507 - 10778453
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatat 114  Q
    |||||||||||||||||| |||||||||||||||||||||| | ||| |||||||    
T  10778507 cagtggcggatcttgagtaaatttgttgggggtgccaaactaccatgaaatatat 10778453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 44352232 - 44352288
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||    
T  44352232 gtggcggatcttgagttattttcttgggg-tgccaaaattctatgaaatatatattaa 44352288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 15554460 - 15554528
Alignment:
Q  67 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagta 135  Q
    ||||||| ||| |||||||||||||||||||||   |||| |||||||||||||   ||||||||||||    
T  15554460 ggatcttaagtaaatttgttgggggtgccaaaccattatgaaatatatattaaacaatttcaagaagta 15554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 42138592 - 42138652
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||| ||| ||| ||||||||  ||||||  ||||||||||||||||||    
T  42138592 cagtggcggatcttgatttattttcttgggggtatcaaactattatggaatatatattaaa 42138652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 3712857 - 3712819
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  3712857 cagtggcggatcttgagttatttttttgggggtgccaaa 3712819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 4808569 - 4808524
Alignment:
Q  103 tatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||| ||||||||||||||||||||||| | || ||||||||||||    
T  4808569 tatgaaatatatattaaatggtttcaagtattatcaataattaata 4808524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 25244926 - 25244886
Alignment:
Q  58 cacagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  25244926 cacagtggcggatcttaacttattttgttgggggtgccaaa 25244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 44091276 - 44091217
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||||||||| |||||||| ||||| ||||| || |||| |||||| ||||||    
T  44091276 cagtggcggatcttgagtaaatttgtt-ggggtaccaaaattgtatgtaatataaattaaa 44091217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 47476612 - 47476556
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||||||||||||||||||  ||||||||||||| ||||  | | ||||||||||||    
T  47476612 cagtggcggatcttgagtttttttgttgggggtgtcaaatatttgtggaatatatat 47476556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 32786611 - 32786751
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 162  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||   | |||| ||    
T  32786611 tggcggatcttgagttaatttgttaggg-tgtcaaacttctatggaatatatattaaacggtttcaagaagtaaaaataattaataattggcttagtcgt 32786709  T
Q  163 ataannnnnnngaaaggagcaagaggatgtgggttcgaatcc 204  Q
    ||||        |||| |||||||||||||||||| ||||||    
T  32786710 ataaattgtttcaaagaagcaagaggatgtgggtttgaatcc 32786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 20612960 - 20613049
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  |||| || || ||| ||||| ||||||    
T  20612960 cagtggcggatcttgagtaaattttttgggggtgccaaacttccatggaatatatattaaacagttttaataactaaaaataaataataa 20613049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 6719788 - 6719875
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 150  Q
    ||||||||||||||||||||| || ||||||   ||||| |||||||||||||||||||||||||||||||   || ||||||||||||||    
T  6719788 cagtggcggatcttgagttaaattcttgggg---ccaaatttctatggaatatatattaaatggtttcaagttatatcaataattaataat 6719875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 14533845 - 14533759
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaata 148  Q
    |||||||| |||||||||||||||||||| || ||||| ||||   ||||||||||||||| |||||||||| | || ||||||||||||    
T  14533845 acagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaata 14533759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 32125919 - 32125965
Alignment:
Q  89 gggtgccaaacttctatggaatatatattaaatggtttcaagaagta 135  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32125919 gggtgccaaacttctatggaatatatattaaacggtttcaggaagta 32125965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 2753740 - 2753680
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| |||||||| |||||  | |||| ||||||||||||    
T  2753740 acagtggcggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaa 2753680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 33582876 - 33582820
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||||||||||||||| ||| ||| |||||||||||||||   ||||||||||||||    
T  33582876 cagtggcggatcttgatttatttttttgggggtgccaaacagttatggaatatatat 33582820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 30590215 - 30590253
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  30590215 cagtggcggatcttgagttatttttttgggggtgccaaa 30590253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 13647501 - 13647444
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    |||| ||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  13647501 gtggtggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 13647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 34385163 - 34385223
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||| ||||||||||||| | | | |||||| ||||| ||||||| ||||||||||||    
T  34385163 acagtggtggatcttgagttattatctcgggggtaccaaaattctatgaaatatatattaa 34385223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 50070247 - 50070176
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaaga 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50070247 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggtttcaaga 50070176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 29924629 - 29924525
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||| ||||||||  || || ||| |||||||  |||||||    
T  29924629 cagtggcggatcttgagttaaatttttgggggtgtcaaacttctatgaaatatatattaaatgatttcaagatatatcagtaaataataattgacctagt 29924530  T
Q  160 ggtat 164  Q
    |||||    
T  29924529 ggtat 29924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 33226345 - 33226277
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttca 128  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33226345 cagtggcggatcttgacttaaattgttgggggtgccaaacttctatgtaatatatattaaatggtttca 33226277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 49497738 - 49497649
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    ||||||||||||||||||||| |||||||||||| ||||| | |||| ||||||||||||||||||| ||||| || |||| ||||||||    
T  49497738 cagtggcggatcttgagttaaattgttgggggtgtcaaacatatatgaaatatatattaaatggttttaagaaatatcaattattaataa 49497649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 19097299 - 19097196
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtg 160  Q
    ||||| |||||||||||||| |||||||| ||| ||||| | |||||||||||||||||||||||||||||| ||  ||| |||||||| |  |||||||    
T  19097299 agtggtggatcttgagttaaattgttgggagtgtcaaacatatatggaatatatattaaatggtttcaagaaatattaattattaataaccctcctagtg 19097200  T
Q  161 gtat 164  Q
    ||||    
T  19097199 gtat 19097196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 47383878 - 47383945
Alignment:
Q  65 gcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaa 132  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  47383878 gcggatcttgacttaatttgttgggggtaccaaatttctatgtaatatatattaaatggtttcaagaa 47383945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 26494776 - 26494694
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataa 142  Q
    |||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||  |||| ||||| |||||||||    
T  26494776 cagtggcggatcttgagtaaattttttgggggtgccaaactttcatggaatatatattaaacagttttaagaactaacaataa 26494694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 13564467 - 13564530
Alignment:
Q  67 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 130  Q
    |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  13564467 ggatcttgagttaatttgttggaggtgcaaaaattttatggaatatatattaaatggtttcaag 13564530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 46851865 - 46851949
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| ||||||| ||| | || |||||||||||||    
T  46851865 tggcggatcttgagttaatttgttgggggtgccaaacttttatg--aaatatattatatggttttaagtattatcaataattaataa 46851949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 52489818 - 52489881
Alignment:
Q  65 gcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttca 128  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||    
T  52489818 gcggatcttgagttaatttgttaggggtgtcaaacttctatggaatgtatattaaacggtttca 52489881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 30828636 - 30828547
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    ||||||||||||||||| |||||||||||||| || |||| ||||||| ||||||||||||||| ||||||||| ||  | ||||||||||    
T  30828636 acagtggcggatcttgacttaatttgttgggg-tgtcaaatttctatgtaatatatattaaatgatttcaagaaatagtagtaattaataa 30828547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 37986928 - 37987010
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataa 142  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||  |||| || || |||||||||    
T  37986928 cagtgacggatcttgagtaaattttttgggggtgccaaacttccatggaatatatattaaacagttttaaaaactaacaataa 37987010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 2930316 - 2930383
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttc 127  Q
    |||||||||||||| ||||||||| ||| |||||||||||| ||||||||||| |||||| |||||||    
T  2930316 cagtggcggatcttcagttaatttattgagggtgccaaactcctatggaatatgtattaagtggtttc 2930383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 31523228 - 31523173
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatata 115  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  31523228 cagtggtggatcttgagttaatttgttgggagtgccaaacttttatggaatatata 31523173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 52797632 - 52797733
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 162  Q
    ||||||||||| ||||||| | |||| | || |||| || ||||||||||||||||||| ||||| |||| ||| |||||||||||||  | ||||||||    
T  52797632 tggcggatcttaagttaatgttttggagatgtcaaatttttatggaatatatattaaatagtttcgagaattaataataattaataattgatctagtggt 52797731  T
Q  163 at 164  Q
    ||    
T  52797732 at 52797733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 13442267 - 13442198
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaaga 131  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||  |||||||||| ||||||||    
T  13442267 cagtggcggatcttgagtaaattttttgagggtgtcaaacttctatggaat--atattaaatgatttcaaga 13442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 50720128 - 50720188
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| ||| |||||||||| ||||||| ||||||||||||    
T  50720128 acagtggcggatcttgagttattttcttgtgggtgccaaaattctatgaaatatatattaa 50720188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 37818674 - 37818727
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    ||||||||||||||| |||||||||||||||||||||  ||||| |||||||||    
T  37818674 tggcggatcttgagtaaatttgttgggggtgccaaaccactatgaaatatatat 37818727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 29132979 - 29132908
Alignment:
Q  58 cacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  29132979 cacagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 29132908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 49908435 - 49908494
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    |||||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  49908435 cagtggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 49908494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 29096458 - 29096400
Alignment:
Q  62 gtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    |||||||||||| ||| || || || ||||||||||||||| |||||||||||||||||    
T  29096458 gtggcggatcttaagtaaaattttttggggtgccaaacttccatggaatatatattaaa 29096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 14968206 - 14968137
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  14968206 cagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 14968137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 5517146 - 5517202
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||||    
T  5517146 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaa 5517202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 6211699 - 6211759
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| | |||||| | |||||||| || ||||||||||||    
T  6211699 acagtggcggatcttgagttattttctcgggggtacaaaacttctttgaaatatatattaa 6211759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 12679888 - 12679948
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||||||||| ||| | |||||| ||||| |||| || ||||||||||||    
T  12679888 acagtggcggatcttgagttattttctcgggggtaccaaaattctttgaaatatatattaa 12679948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 2930401 - 2930436
Alignment:
Q  114 tattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||| |||||||||||||||||||||||||||||    
T  2930401 tattaagtggtttcaagaagtaacaataattaataa 2930436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 17555331 - 17555277
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatatt 117  Q
    ||||||||||||||||| ||| | |||||| ||||| ||||||| ||||||||||    
T  17555331 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatatt 17555277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 413
Target Start/End: Original strand, 46852096 - 46852174
Alignment:
Q  335 agcaatttacgacaccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaa 413  Q
    |||||||| ||| ||| ||||||||||||| || || || |||||||| ||||  ||||||||||||  ||||||||||    
T  46852096 agcaatttgcgataccgcctttccactgcagcaactgaattctaattgttataatacacctaatataatatataaggaa 46852174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 27993623 - 27993692
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    ||||||||||||||||  | |||| ||||||||||||||  | | ||||||||||||||||  |||||||    
T  27993623 cagtggcggatcttgatatcattttttgggggtgccaaatatttgtggaatatatattaaaacgtttcaa 27993692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 40704975 - 40704918
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||||||||||||||   | |||||||||||||||||||||||   ||||||||||||    
T  40704975 acagtggcggatcttagctaaatttgttgggggtgccaaacttgcctggaatatatat 40704918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 53436540 - 53436580
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  53436540 acagtggcggatcttgagtaaatttattaggggtgccaaac 53436580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 54085525 - 54085453
Alignment:
Q  67 ggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaa 139  Q
    ||||||||| | | |||||||||||||||||| || |||| |||||||||| ||  ||||||| | |||||||    
T  54085525 ggatcttgattaattttgttgggggtgccaaaattgtatgcaatatatattgaaccgtttcaacatgtaacaa 54085453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 4580554 - 4580658
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    ||||||||||||||||||||| |||||||||||||||||  | |||| |||||||||||||||||||||| || || |||| |||| |||||| ||||||    
T  4580554 cagtggcggatcttgagttaaattgttgggggtgccaaatatatatgaaatatatattaaatggtttcaaaaaatatcaattattattaatcatcctagt 4580653  T
Q  160 ggtat 164  Q
    |||||    
T  4580654 ggtat 4580658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 38972215 - 38972319
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagt 159  Q
    ||||| ||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||| || |||| |||||||| |  ||||||    
T  38972215 cagtgacggatcttgagttaaattgttggggatgccaaacatatatggaatatatattaaatggtttcaagaaatatcaattattaataaccgtcctagt 38972314  T
Q  160 ggtat 164  Q
    |||||    
T  38972315 ggtat 38972319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 4056207 - 4056296
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataat 150  Q
    |||||| ||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||  ||| |||||||||||||    
T  4056207 agtggcagatcttgagttaaattcttgggggtgccaaatttctatgaaatatatattaaatggtttcaagatataataataattaataat 4056296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 9615681 - 9615753
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgcc-aaacttctatggaatatatattaaatggtttcaag 130  Q
    |||||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  9615681 acagtggcggatcttgagttaaattcttgggggtgccaaaatttctatggaatatatattaaatggtttcaag 9615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 38575567 - 38575655
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    |||||||||||||| | ||||||||||||||  |||||||||||||| |||||||||||||| |||| ||||||||  ||| ||||||||    
T  38575567 cagtggcggatcttaacttaatttgttggggc-gccaaacttctatgaaatatatattaaatagttttaagaagtagtaatgattaataa 38575655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 30076216 - 30076300
Alignment:
Q  58 cacagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataa 142  Q
    |||||||||||||||||||| ||||| || || |||||||||||| |||||||||||||||||  |||| || || |||||||||    
T  30076216 cacagtggcggatcttgagtaaattttttaggagtgccaaacttccatggaatatatattaaacagttttaaaaattaacaataa 30076300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 1315238 - 1315149
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataa 149  Q
    ||||| |||||||||  |||| |||||||||||||||||| | |||| ||||||||||||||||||| || || || |||| ||||||||    
T  1315238 cagtgacggatcttggattaaattgttgggggtgccaaacatatatgaaatatatattaaatggttttaaaaaatatcaattattaataa 1315149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 6590472 - 6590403
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    |||||||||||||||| ||||||| | |||||||||||| ||||| | |||||||||||| |||||||||    
T  6590472 cagtggcggatcttgaattaatttttcgggggtgccaaatttctacgtaatatatattaactggtttcaa 6590403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 5890708 - 5890605
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaataatcaacctagtggt 162  Q
    ||||||||||||||| ||| | ||| |||||||||| ||| ||||||||||||||||   |||| ||||| ||||||||| ||||||  || |||||||     
T  5890708 tggcggatcttgagtaaatcttttgagggtgccaaaattccatggaatatatattaaccagttttaagaactaacaataaataataactaatctagtggc 5890609  T
Q  163 ataa 166  Q
    ||||    
T  5890608 ataa 5890605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 31162322 - 31162377
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||||||||||||||| | |||||||||||||||||||| || |||| |||||||||    
T  31162322 cagtggcggatcttgattaaatttgttgggggtgccaaa-ttgtatgtaatatatat 31162377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 12060133 - 12060094
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaac 99  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  12060133 cagtggcggatcttgagtgaatttattgggggtgccaaac 12060094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 17302996 - 17303047
Alignment:
Q  69 atcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||||| ||||  || ||| |||||||||||||||||||||||||||||    
T  17302996 atcttgagtaaattctttagggatgccaaacttctatggaatatatattaaa 17303047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 42834734 - 42834675
Alignment:
Q  61 agtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaa 120  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||  ||||||||||||| ||||    
T  42834734 agtggcggatcttgacttattttcttgggggtgccgaactattatggaatatatactaaa 42834675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 14735663 - 14735781
Alignment:
Q  319 tgaaccagtaaccttaagcaatttacgacaccccctttccactgcaacagctaaaatctaattgatatatgacacctaatatagaatataaggaaaacct 418  Q
    |||||||  |||||| | ||||||||   ||||| |||||||  ||||| | ||| |||||||||||||  ||||||||||||| ||||||| |||| ||    
T  14735663 tgaaccaacaacctttaacaatttacagtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatct 14735762  T
Q  419 gagggatatcatggcccct 437  Q
    | || ||  ||||||||||    
T  14735763 ggggaatgccatggcccct 14735781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 32399268 - 32399198
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaag 130  Q
    |||||| ||||||||| | ||||| ||||||||||||||  | |||| | ||||||||||| |||||||||    
T  32399268 cagtggtggatcttgaataaatttattgggggtgccaaaaatatatgtattatatattaaacggtttcaag 32399198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 31266618 - 31266565
Alignment:
Q  63 tggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatat 116  Q
    |||| |||||||| ||||||| ||| ||||||||||| | ||||||||||||||    
T  31266618 tggcagatcttgacttaatttcttgtgggtgccaaacgtttatggaatatatat 31266565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 19761 - 19834
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaagaag 133  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  19761 cagtggcggatcttgacttaaattgttgggggtgccaaacttctatgtaatatatattaaatggtttcatgaag 19834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 35996 - 35908
Alignment:
Q  60 cagtggcggatcttgagttaatttgtt-gggggtgccaaacttctatggaatatatattaaatggtttcaagaagtaacaataattaat 147  Q
    |||||||||||||||||| ||||| || |||||||||||||||| ||| |||||||||||||  |||| || || ||||||||| ||||    
T  35996 cagtggcggatcttgagtaaatttttttgggggtgccaaacttccatgaaatatatattaaacagttttaaaaactaacaataaataat 35908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 63813 - 63873
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaa 119  Q
    ||||||||||||||| ||||| ||| | |||||| ||||||||||||| ||||||||||||    
T  63813 acagtggcggatctttagttattttctcgggggtaccaaacttctatgaaatatatattaa 63873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 64791 - 64721
Alignment:
Q  59 acagtggcggatcttgagttaatttgttgggggtgccaaacttctatggaatatatattaaatggtttcaa 129  Q
    ||||||||||||||||||| | ||||||||||||||||||  || || ||||||||| ||||  |||||||    
T  64791 acagtggcggatcttgagtaattttgttgggggtgccaaatatcgatagaatatataataaacagtttcaa 64721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 230649 - 230611
Alignment:
Q  60 cagtggcggatcttgagttaatttgttgggggtgccaaa 98  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  230649 cagtggcggatcttgagtttatttcttgggggtgccaaa 230611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University