View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11915_low_9 (Length: 608)
Name: NF11915_low_9
Description: NF11915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11915_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 26914776 - 26914303
Alignment:
| Q |
1 |
ctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914776 |
ctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtat |
26914677 |
T |
|
| Q |
101 |
caaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914676 |
caaatcaaagggcaatgagggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataac |
26914577 |
T |
|
| Q |
201 |
taggcaatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26914576 |
taggcaatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaaggcagt |
26914477 |
T |
|
| Q |
301 |
taaaataagcgactttgttgctgctaactgtg------ataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttatagatgggat |
394 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26914476 |
taaaataaacgactttgttgctgctaactgtgataatcataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttacagatgggat |
26914377 |
T |
|
| Q |
395 |
tatttttgttatttcttgatcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgc |
468 |
Q |
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| T |
26914376 |
catttttgttatttcttgatcgactgttgtctgcttcttcaggttgatgcaatggctcatggaaaagttgatgc |
26914303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 437 - 593
Target Start/End: Complemental strand, 26914310 - 26914154
Alignment:
| Q |
437 |
gttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatcaggttattacttgaacaattttgtgtttatttcaaatccaagtt |
536 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914310 |
gttgatgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatcaggttattacttgaacaattttgtgtttatttcaaatccaagtt |
26914211 |
T |
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| Q |
537 |
ttgctgtattgtttgttaatgattgacatgtcttttgcatatgggagagaacaaagt |
593 |
Q |
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| T |
26914210 |
ttgctgtattgtttgttaatgattgacatgtcttttgcatatgggagagaacaaagt |
26914154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 2 - 593
Target Start/End: Complemental strand, 51182519 - 51181959
Alignment:
| Q |
2 |
tcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51182519 |
tcattcttggctttgatcatcatattgacatctttgcttttc-cccacttcaaaatacttaataattattttagtggagttgctgcaaaaatccagtatc |
51182421 |
T |
|
| Q |
102 |
aaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataact |
201 |
Q |
| |
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|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| | |
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| T |
51182420 |
aaatcaaaggacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgag---------t |
51182330 |
T |
|
| Q |
202 |
aggcaatggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagtt |
301 |
Q |
| |
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||||||||||| ||||||||||||||| | || | ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51182329 |
aggcaatggtacaatgtcaatgtcttc-------attcttatgatgacgtcaaactcttatgctgttgtaggtctttcatttaactcgccaaagacagtt |
51182237 |
T |
|
| Q |
302 |
aaaataagcgactttgttgctgctaactgtgataagagtcttgtatttgtggtaagcttttgcaagtctttata------tacactttatagatgggatt |
395 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
51182236 |
aaaataagagacttcgttgctgctaactgtgataagaatcttgtatttgtggtaagcttttgcaagtctttatataatattacactttacagatgggatc |
51182137 |
T |
|
| Q |
396 |
atttttgttatttcttgatcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatcagg |
495 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||| |||| |
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| T |
51182136 |
atttttgttatttcttgattgaatgttgtctgcttcttcaggttggtgcaatgcctcatggaaatattgatgccgattacattgatgatttcataccagg |
51182037 |
T |
|
| Q |
496 |
ttattacttgaacaattttgtgtttatttcaaatccaagttttgctgtattgtttgttaatgattgacatgtcttttgcatatgggagagaacaaagt |
593 |
Q |
| |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51182036 |
----------------ttggtgtttatttcaaatccaagttttgctgta----ttgttaatgattgacatgtcttttgcatatgggagaggacaaagt |
51181959 |
T |
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