View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11916_high_13 (Length: 419)
Name: NF11916_high_13
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_13 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 35355014 - 35355420
Alignment:
| Q |
1 |
cctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaatgagcttcctaatttctagtgacattccatatgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
35355014 |
cctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaacgagcttcctaatttctagtcacattccatatgcta |
35355113 |
T |
|
| Q |
101 |
attgtttattttgtccgtgatatatttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactac |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35355114 |
attgtttattttctccgtgatatatttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactac |
35355213 |
T |
|
| Q |
201 |
atttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35355214 |
atttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaacta |
35355313 |
T |
|
| Q |
301 |
cacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
35355314 |
cacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatgtggccatttacaat |
35355413 |
T |
|
| Q |
401 |
gttctct |
407 |
Q |
| |
|
||||||| |
|
|
| T |
35355414 |
gttctct |
35355420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 35381020 - 35381429
Alignment:
| Q |
1 |
cctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttca-------acaat-gctaatgagcttcctaatttctagtgacattcc |
92 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || | |||||| |||| || | |||| | | | ||| |
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|
| T |
35381020 |
cctctcttactttcccattttaaagtatctctcatacacaccatcgtaagtttacaatgttactattgttaatgaacttcatagtgtctaatcaaagtcc |
35381119 |
T |
|
| Q |
93 |
atatgctaattgtttattttgtccgtgatatatttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgt |
192 |
Q |
| |
|
||||||||||| ||||||| | | |||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||| |||||||| || | |
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|
| T |
35381120 |
atatgctaattaattattttcttcttgatatatttccacaggtttcactcattgcatcacaccaaatttaggtctaattactcactcttcatgcctatat |
35381219 |
T |
|
| Q |
193 |
atgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacaca |
292 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35381220 |
atgactacatttatggcaccgtagataaatccacagatgctacatatgaagcctcattgatgagaccaaaggagtcaccagatgtggtccacttaacaca |
35381319 |
T |
|
| Q |
293 |
tttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggcca |
392 |
Q |
| |
|
||||||||||||| ||| || |||||| | |||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| | ||||| ||||| |
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|
| T |
35381320 |
tttaactacacttagttccatctatcaattacgtttaggctttacttcattagcctccaatcctcaaacatctaaatggtacctatatttaatgtggccc |
35381419 |
T |
|
| Q |
393 |
tttacaatgt |
402 |
Q |
| |
|
|||||||||| |
|
|
| T |
35381420 |
tttacaatgt |
35381429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 125 - 407
Target Start/End: Original strand, 35370585 - 35370867
Alignment:
| Q |
125 |
tttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatcc |
224 |
Q |
| |
|
|||||| |||||||||||| | |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
35370585 |
tttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatcc |
35370684 |
T |
|
| Q |
225 |
acagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgc |
324 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||| | | |
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|
| T |
35370685 |
acagatgttatatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattac |
35370784 |
T |
|
| Q |
325 |
gtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctct |
407 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
35370785 |
gtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgttctct |
35370867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 35370460 - 35370509
Alignment:
| Q |
3 |
tctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
52 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
35370460 |
tctcatactttccccaattgaagtatctctcttacacaccatcgtaagtt |
35370509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 130 - 407
Target Start/End: Complemental strand, 19629516 - 19629239
Alignment:
| Q |
130 |
acaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacaga |
229 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| ||| | || |||||||| |||||||| || |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
19629516 |
acaggtttcattcgctgcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacaga |
19629417 |
T |
|
| Q |
230 |
tgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgttta |
329 |
Q |
| |
|
||||||||||||| | | |||| ||||| | |||| |||||||||||||| ||||||||||||||||| ||||||||||| || | |||| | || ||| |
|
|
| T |
19629416 |
tgctacatatgaatcttgtttgaagagacaagaggaatcaccagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgctta |
19629317 |
T |
|
| Q |
330 |
ggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctct |
407 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||| |||||||||||||| | ||||| ||||| |||||| ||| |||| |
|
|
| T |
19629316 |
gggtttgcttccttagcctccaaccctcaaacttctaaatggtatctcaatttaatgtggccttttacattgtgctct |
19629239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 130 - 407
Target Start/End: Original strand, 19685135 - 19685412
Alignment:
| Q |
130 |
acaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacaga |
229 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||| | || |||||||| |||||||| || |||||| ||||||||||||| ||| ||| |||| |||| |
|
|
| T |
19685135 |
acaggtttcactcgctgcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcaga |
19685234 |
T |
|
| Q |
230 |
tgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgttta |
329 |
Q |
| |
|
||||||||||||| | | | || ||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||| || | |||| | |||||| |
|
|
| T |
19685235 |
tgctacatatgaagcttgttcgaagagacaagaggagtcaccagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgttta |
19685334 |
T |
|
| Q |
330 |
ggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctct |
407 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| |||| |
|
|
| T |
19685335 |
gggcttgcttccttagcctccaaccctcaaacatcgaaatggtatctcaatttaatgtggccttttacaatgtgctct |
19685412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 19630160 - 19630111
Alignment:
| Q |
3 |
tctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
52 |
Q |
| |
|
|||| ||||||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
19630160 |
tctcctactttcccctattgaagtatctctcgtacacaccatcgtaagtt |
19630111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 19684666 - 19684715
Alignment:
| Q |
3 |
tctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
52 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
19684666 |
tctcctactttccccaattgaagtatctcacatacacaccatcgtaagtt |
19684715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 2275407 - 2275367
Alignment:
| Q |
168 |
aactactcacttttcatgccaatgtatgactacatttatgg |
208 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
2275407 |
aactactcactcttcatgccactttatgactacatttatgg |
2275367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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