View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11916_high_14 (Length: 409)

Name: NF11916_high_14
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11916_high_14
NF11916_high_14
[»] scaffold0096 (2 HSPs)
scaffold0096 (153-323)||(27825-27996)
scaffold0096 (314-346)||(28000-28032)
[»] chr3 (10 HSPs)
chr3 (153-323)||(43747827-43747998)
chr3 (153-323)||(38888238-38888408)
chr3 (153-323)||(46235332-46235502)
chr3 (223-307)||(5175531-5175616)
chr3 (314-346)||(40686998-40687030)
chr3 (3-39)||(43000281-43000317)
chr3 (314-346)||(43747791-43747823)
chr3 (314-346)||(46235506-46235538)
chr3 (165-291)||(5185750-5185875)
chr3 (277-342)||(24087994-24088062)
[»] chr8 (9 HSPs)
chr8 (157-323)||(26747796-26747962)
chr8 (165-323)||(27631622-27631780)
chr8 (223-323)||(24100744-24100841)
chr8 (314-350)||(19554329-19554365)
chr8 (321-350)||(25980773-25980802)
chr8 (275-323)||(43638369-43638418)
chr8 (314-350)||(19412068-19412104)
chr8 (314-346)||(26747966-26747998)
chr8 (314-346)||(43638422-43638454)
[»] chr5 (6 HSPs)
chr5 (153-323)||(7529801-7529971)
chr5 (229-323)||(35467931-35468025)
chr5 (243-312)||(9269585-9269656)
chr5 (314-346)||(35468029-35468061)
chr5 (276-322)||(35468288-35468334)
chr5 (153-202)||(35467532-35467581)
[»] chr4 (11 HSPs)
chr4 (153-323)||(49233123-49233293)
chr4 (226-346)||(45781796-45781916)
chr4 (270-346)||(6447107-6447185)
chr4 (153-323)||(49889285-49889455)
chr4 (153-312)||(53921793-53921951)
chr4 (232-301)||(30658062-30658139)
chr4 (153-202)||(6447231-6447280)
chr4 (244-301)||(33189069-33189126)
chr4 (230-310)||(8281410-8281491)
chr4 (153-202)||(45781730-45781779)
chr4 (314-346)||(53921966-53921998)
[»] chr1 (5 HSPs)
chr1 (153-323)||(8170457-8170627)
chr1 (153-323)||(25659044-25659214)
chr1 (153-323)||(4795989-4796159)
chr1 (314-346)||(25659008-25659040)
chr1 (276-323)||(11523231-11523278)
[»] chr2 (3 HSPs)
chr2 (153-346)||(5077186-5077376)
chr2 (280-346)||(42196761-42196828)
chr2 (314-342)||(8588477-8588505)
[»] chr7 (3 HSPs)
chr7 (153-323)||(2430664-2430834)
chr7 (314-346)||(2430628-2430660)
chr7 (306-346)||(18791161-18791201)
[»] scaffold0060 (1 HSPs)
scaffold0060 (153-323)||(67651-67822)


Alignment Details
Target: scaffold0096 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 27825 - 27996
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaa-ggggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||       |||||||||||||||||||||||||||||    
T  27825 taaatggtggaccccataccttttttgtttctcttcaaaagtgagaagaaaggggaaagaagacaaaaaaagtctattatgccattggttatttaattaa 27924  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27925 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 27996  T

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Target: scaffold0096; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 28000 - 28032
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    ||||||||||||||||||| |||||||||||||    
T  28000 tctctcttctttctcttatgccaaacaatacat 28032  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 43747998 - 43747827
Alignment:
Q  153 taaatggtggaccccatacctttttt-gtttctcttcaaaagtaagaagaagggga-aagaagacnnnnnnngtctattatgccattggttatttaatta 250  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||||| | || ||||||||       ||||||||||||||||||| ||||||||    
T  43747998 taaatggtgggctccatacctttttttgtttctcttcaaaagtaagaagaatgagagaagaagacaaaaaa-gtctattatgccattggttttttaatta 43747900  T
Q  251 attataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
     | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  43747899 ttcataaattataatgttgtcttatcaaggatatttttgtttttttaaaaataataacatttctttctcttct 43747827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 38888238 - 38888408
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||| | || ||||||||       ||||||||||||||||||| |||||||||    
T  38888238 taaatggtgggctccataccttttttgtttttcttcaaaagtgagaagaaagagggaagaagacaaaaaa-gtctattatgccattggttttttaattaa 38888336  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  38888337 tcataaattataatgttgtcttatcaaggatatttttatctttttaaaaataacaacatttctttctcttct 38888408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 46235332 - 46235502
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    |||||| ||| ||||||||| ||||||||||||||||||| | ||||||| | || ||||||||       ||||||||||||||||||| |||||||||    
T  46235332 taaatgatgggccccataccctttttgtttctcttcaaaaatgagaagaaagagggaagaagacaaaaaa-gtctattatgccattggttttttaattaa 46235430  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46235431 tcataaattataatgatgtcttatcaaggatatttttgtctttttaaaaataataacatttctttctcttct 46235502  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 5175531 - 5175616
Alignment:
Q  223 gtctattatgccattggttatttaattaattataaattataatgttgtcttatcaaggatatttttgtctttttaa-aaataataa 307  Q
    ||||| |||| |||||||| || ||||||| ||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||    
T  5175531 gtctaatatgtcattggtttttcaattaatcataaattataatgttgtcttatcaaagttatttttatctttttaataaataataa 5175616  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 40686998 - 40687030
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||||||||||||||||||||||    
T  40686998 tctctcttctttctcttataccaaacaatacat 40687030  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 43000281 - 43000317
Alignment:
Q  3 gtgaccacctgaaccaccaaatcgcgtcattctttag 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  43000281 gtgaccacctgaaccaccaaatcgcgtcatcctttag 43000317  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 43747823 - 43747791
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||||||||||||||||||||||    
T  43747823 tctctcttctttctcttataccaaacaatacat 43747791  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 46235506 - 46235538
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||||||||||||||||||||||    
T  46235506 tctctcttctttctcttataccaaacaatacat 46235538  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 291
Target Start/End: Original strand, 5185750 - 5185875
Alignment:
Q  165 cccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttattt-aattaattataaattat 262  Q
    |||||||||||||  ||||||||||||||  ||||||| | |||||||| ||       ||||| ||| ||||||||| ||| ||||||| |||||||||    
T  5185750 cccatacctttttgttttctcttcaaaagggagaagaaagaggaaagaacacaaaa---gtctaatataccattggttttttcaattaatcataaattat 5185846  T
Q  263 aatgttgtcttatcaaggatatttttgtc 291  Q
    ||| ||| |||||||| | ||||||||||    
T  5185847 aatattggcttatcaacgttatttttgtc 5185875  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 24087994 - 24088062
Alignment:
Q  277 aaggatatttttgtcttttt-aaaaataataacatttctctctcttc--tttctcttataccaaacaat 342  Q
    |||||||||||||||||||| ||||||  || ||| ||| |||||||  ||||||||||||||||||||    
T  24087994 aaggatatttttgtctttttaaaaaattgtagcatctctttctcttctatttctcttataccaaacaat 24088062  T

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Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 26747796 - 26747962
Alignment:
Q  157 tggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaattat 255  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||| | || ||||||||       ||||||||||||||||||| |||||||||| ||    
T  26747796 tggtgggctccataccttttttgtttctcttcaaaagtgagaagaaagagggaagaagacaaaaaa-gtctattatgccattggttttttaattaatcat 26747894  T
Q  256 aaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  26747895 aaattagaatgttgtcttatcaaggatatttttgtcttttaaaaaataataacatttctttctcttct 26747962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 27631780 - 27631622
Alignment:
Q  165 cccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaattataaattata 263  Q
    ||||||||||||||||||||||| ||||||  |||||| | || ||||||||       ||||||||||||||||||| |||||||||| ||||| | ||    
T  27631780 cccataccttttttgtttctctttaaaagtgtgaagaaagagggaagaagacaaaaaa-gtctattatgccattggttttttaattaatcataaagtgta 27631682  T
Q  264 atgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  27631681 atgttatcttattaaggatatttttgtctttttaaaaataataacatttctttctcttct 27631622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 24100841 - 24100744
Alignment:
Q  223 gtctattatgccattggttatttaattaattataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttc 322  Q
    ||||| |||||||||| || |||||||||| || | |   ||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||    
T  24100841 gtctaatatgccattgattttttaattaatcatgagt---aatcttgtcttatcaagaatatttttgtgtttttaaaaataataacatttctttcttttc 24100745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 19554329 - 19554365
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacataaaa 350  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19554329 tctctcttctttctcttataacaaacaatacataaaa 19554365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 350
Target Start/End: Original strand, 25980773 - 25980802
Alignment:
Q  321 tctttctcttataccaaacaatacataaaa 350  Q
    ||||||||||||||||||||||||||||||    
T  25980773 tctttctcttataccaaacaatacataaaa 25980802  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 43638369 - 43638418
Alignment:
Q  275 tcaaggatatttttgtcttttta-aaaataataacatttctctctcttct 323  Q
    ||||||||||||||||||||||| || |||||||||| || |||||||||    
T  43638369 tcaaggatatttttgtctttttagaatataataacatctcactctcttct 43638418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 19412104 - 19412068
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacataaaa 350  Q
    |||||||||||||||||| | ||||||||||||||||    
T  19412104 tctctcttctttctcttacaacaaacaatacataaaa 19412068  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 26747966 - 26747998
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    ||||||||||||||||||||||| |||||||||    
T  26747966 tctctcttctttctcttataccatacaatacat 26747998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 43638422 - 43638454
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    ||||| |||||||||||||||||||||||||||    
T  43638422 tctcttttctttctcttataccaaacaatacat 43638454  T

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Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 7529971 - 7529801
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||| ||||||||||||||||||| |||||||||| ||||||||| || ||||||||       ||||| |||||||||| || |||||||||    
T  7529971 taaatggtggatcccataccttttttgtttcccttcaaaagtgagaagaaggagggaagaagacaaaaaa-gtctaatatgccattgattttttaattaa 7529873  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7529872 tcataaaaaataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctttctcttct 7529801  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 35467931 - 35468025
Alignment:
Q  229 tatgccattggttatttaattaattataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    |||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35467931 tatgccattgattttttaattaatcataaattataatgttgttttatcaaggatatttttgtctttttaaaaataatagcatttctttctcttct 35468025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 9269656 - 9269585
Alignment:
Q  243 tttaattaattataaattataatgttgtcttatcaaggatatttttgtcttttt--aaaaataataacattt 312  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||| ||| |  ||||||||||||||||    
T  9269656 tttaattaatcataaattataatgttgtcttatcaagattatttttgtttttataaaaaaataataacattt 9269585  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 35468029 - 35468061
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||||||||||||||||||||||    
T  35468029 tctctcttctttctcttataccaaacaatacat 35468061  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 35468334 - 35468288
Alignment:
Q  276 caaggatatttttgtctttttaaaaataataacatttctctctcttc 322  Q
    ||||||||||||||||||||||||| |||  ||| ||||||||||||    
T  35468334 caaggatatttttgtctttttaaaattaaacacacttctctctcttc 35468288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 35467532 - 35467581
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaa 202  Q
    ||||||||||  |||||||||||||  ||||||||||||||| |||||||    
T  35467532 taaatggtgggtcccatacctttttgttttctcttcaaaagtgagaagaa 35467581  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 49233123 - 49233293
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||||| | || ||||||||       || ||||||||| |||||| ||||||| |    
T  49233123 taaatggtgggcctcataccttttttgtttctcttcaaaagtgagaagaaagagggaagaagacaaaaaa-gtttattatgccgttggttttttaattga 49233221  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  49233222 tcataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttgtttctcttct 49233293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 226 - 346
Target Start/End: Original strand, 45781796 - 45781916
Alignment:
Q  226 tattatgccattggttatttaattaattataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttcttt 325  Q
    ||||||| |||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  45781796 tattatgtcattggttttttaattaatcataaattgtaatgttatcttatcaaggatatttttgactttttaaaaataataacatttctttctcttcttt 45781895  T
Q  326 ctcttataccaaacaatacat 346  Q
     ||||||| ||||||||||||    
T  45781896 ttcttatatcaaacaatacat 45781916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 6447185 - 6447107
Alignment:
Q  270 tcttatcaaggatatttttgtctttttaaaaataataacatttc--tctctcttctttctcttataccaaacaatacat 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  6447185 tcttatcaaggatatttttgtctttttaaaaataataacatttctttctctcttctttctcttataccaaacaatacat 6447107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 49889455 - 49889285
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||  |||||||||||||  ||||||||||||||| ||||||| | || ||||||||        |||| |||| ||||  || |||||||||    
T  49889455 taaatggtgggtcccatacctttttgttttctcttcaaaagtgagaagaaagagggaagaagacaaaaata-tctaatatgtcattaattttttaattaa 49889357  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||    
T  49889356 tcataaattataatgttgtcttatcaaagatatttttgtctttttaaaaataatagcatttatttctcttct 49889285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 153 - 312
Target Start/End: Original strand, 53921793 - 53921951
Alignment:
Q  153 taaatggtggaccccatacctttttt-gtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaatta 250  Q
    ||||| |||| |||||||| |||||| |||||||||||||||| ||||||| | || ||||||||       ||||| |||| |||||||| |||||       
T  53921793 taaattgtgggccccatacttttttttgtttctcttcaaaagtgagaagaaagagggaagaagacaaaaaaagtctaatatgtcattggttttttaa--- 53921889  T
Q  251 attataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacattt 312  Q
    || ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  53921890 atcataaattataatgttgtcttatcaaggatatttttatccttttgaaaataataacattt 53921951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 30658062 - 30658139
Alignment:
Q  232 gccattggttatttaattaattataaattataatgttg--------tcttatcaaggatatttttgtctttttaaaaa 301  Q
    |||||||||| |||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  30658062 gccattggttttttaattaatcataaattataatgttgtcttatgatcttatcaaggatatttttgtctttttaaaaa 30658139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 6447280 - 6447231
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaa 202  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||    
T  6447280 taaatggtgggccccataccttttttgtttctcttcaaatgtgagaagaa 6447231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 33189069 - 33189126
Alignment:
Q  244 ttaattaattataaattataatgttgtcttat-caaggatatttttgtctttttaaaaa 301  Q
    ||||||||| |||||||||| |||||| |||| |||||||||||||||||||| |||||    
T  33189069 ttaattaataataaattata-tgttgttttattcaaggatatttttgtcttttcaaaaa 33189126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 8281410 - 8281491
Alignment:
Q  230 atgccattggttatttaattaattataaattataatgttgtctta---tcaaggatatttttgtctttttaaaaataataacat 310  Q
    |||||||||||| ||||| |||| || ||||||| |||||||||    |||| |||||||||||| ||||||||||||||||||    
T  8281410 atgccattggtt-tttaactaatcatgaattata-tgttgtctttaactcaaagatatttttgtccttttaaaaataataacat 8281491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 45781730 - 45781779
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaa 202  Q
    ||||||| || || |||| ||||||||||||||||||||||| |||||||    
T  45781730 taaatggcgggcctcataacttttttgtttctcttcaaaagtgagaagaa 45781779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 53921966 - 53921998
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||| ||||||||||||||||||    
T  53921966 tctctcttctttcttttataccaaacaatacat 53921998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 8170627 - 8170457
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||  |||||||||||||  ||||||||||||||| ||||||| | |||||||||||       ||||| |||||||||| || || ||||||    
T  8170627 taaatggtgggtcccatacctttttgttttctcttcaaaagtgagaagaaagaggaaagaagacaaaaat-gtctaatatgccattgatttttcaattaa 8170529  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8170528 tcataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctttctcttct 8170457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 25659214 - 25659044
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||  |||||||| ||||||||||||||||||||| ||||||| | || ||||||||       |||||||||| |||||||| |||||||||    
T  25659214 taaatggtgggtcccataccgtttttgtttctcttcaaaagtgagaagaaagagggaagaagacaaaaaa-gtctattatgtcattggttttttaattaa 25659116  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  25659115 tcataaattataatgttgtcttatcaaagatatttttgtctttttaaaaataatatcatttctttctcttct 25659044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 4796159 - 4795989
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||  ||||||||||||   ||||||||||||||| ||||||| | || ||||||||       ||||| |||||||||| || || ||||||    
T  4796159 taaatggtgggtcccataccttttagttttctcttcaaaagtgagaagaaagagggaagaagacaaaaat-gtctaatatgccattgatttttcaattaa 4796061  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4796060 tcataaattataatgttgttttatcaaggatatttttgtctttttaaaaataataacatttctttctcttct 4795989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 25659040 - 25659008
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||||||||||||||||||||||    
T  25659040 tctctcttctttctcttataccaaacaatacat 25659008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 11523278 - 11523231
Alignment:
Q  276 caaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    ||||||||||||||||||||||||| |||  ||| |||||||||||||    
T  11523278 caaggatatttttgtctttttaaaattaaacacacttctctctcttct 11523231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 153 - 346
Target Start/End: Complemental strand, 5077376 - 5077186
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||  |||||||||||||  ||||||||||||||| ||||||| | || ||||||||       ||||| |||| ||||| || |||||||||    
T  5077376 taaatggtgggtcccatacctttttgttttctcttcaaaagtgagaagaaagagggaagaagacaaaaaa-gtctaatatgtcattgattttttaattaa 5077278  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttctttctcttataccaaacaatacat 346  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||| | |||||||||||||||||||||||||||||||    
T  5077277 tcataaattatgatgttgtcttatcaaggatatttttgtctttttaaaaataat---atttttttctcttctttctcttataccaaacaatacat 5077186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 42196761 - 42196828
Alignment:
Q  280 gatatttttgtctttttaaaaataata-acatttctctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||| ||| |||||| | | ||| |||| |||||||||||||||||||||||||||||||    
T  42196761 gatatttttgtcatttcaaaaatcagacacacttctttctcttctttctcttataccaaacaatacat 42196828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 8588505 - 8588477
Alignment:
Q  314 tctctcttctttctcttataccaaacaat 342  Q
    |||||||||||||||||||||||||||||    
T  8588505 tctctcttctttctcttataccaaacaat 8588477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 2430834 - 2430664
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttatttaattaa 251  Q
    ||||||||||  |||||||||||||  ||||||||||||||| ||||||| | || ||||||||       ||||| |||||||||| || |||||||||    
T  2430834 taaatggtgggtcccatacctttttgttttctcttcaaaagtgagaagaaagagggaagaagacaaaaat-gtctaatatgccattgattttttaattaa 2430736  T
Q  252 ttataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2430735 tcataaattataatgttgtcttattaaggatatttttgtctttttaaaaataataacatttctttctcttct 2430664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 2430660 - 2430628
Alignment:
Q  314 tctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||||||||||||||||||||||    
T  2430660 tctctcttctttctcttataccaaacaatacat 2430628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 18791201 - 18791161
Alignment:
Q  306 aacatttctctctcttctttctcttataccaaacaatacat 346  Q
    |||||||||||||  |||||||||||||||||||| |||||    
T  18791201 aacatttctctcttctctttctcttataccaaacactacat 18791161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 67651 - 67822
Alignment:
Q  153 taaatggtggaccccataccttttttgtttctcttcaaaagtaagaagaagg-ggaaagaagacnnnnnnngtctattatgccattggttattt-aatta 250  Q
    |||||||||| | |||||||||||||||| |||||||||||| ||||||| | || ||||||||       |||||||||||| |||||| ||| |||||    
T  67651 taaatggtgggctccataccttttttgttactcttcaaaagtgagaagaaagagggaagaagacaaaaaa-gtctattatgccgttggtttttttaatta 67749  T
Q  251 attataaattataatgttgtcttatcaaggatatttttgtctttttaaaaataataacatttctctctcttct 323  Q
    || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  67750 atcataaattatattgttgtcttatcaatgatatttttgtctttttaaaaataataacatttctttctcttct 67822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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