View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11916_high_17 (Length: 371)
Name: NF11916_high_17
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 170801 - 170472
Alignment:
| Q |
19 |
gatcaaaattaaagaacagaataacaatttagtgctttgattggtaacatatcaagcattgaaagaggtattgtccgagcaaaaaatatgatccgtccag |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
170801 |
gatcaaaattaaagaacaaaataacaatttagtgctttggttggtaacatatcaagcattgaaagaggtattgtccgaacaaaaaatatgacccgtccag |
170702 |
T |
|
| Q |
119 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctgacaagtgtgcttatgtgtggattcttgactttggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
170701 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctggcaagtgtgcttatgtgtggattcttgactttggt |
170602 |
T |
|
| Q |
219 |
tgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
318 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
170601 |
tgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
170502 |
T |
|
| Q |
319 |
aaaacgactacctcaaggatatgagtgcta |
348 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
170501 |
aaaacgactatctcaaggatatgagtgcta |
170472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University