View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_high_20 (Length: 335)
Name: NF11916_high_20
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 3010421 - 3010102
Alignment:
| Q |
14 |
gatgaagcaaacttggaaactggaacatataggtactagagcaaatctgaattccatcaaattgggttttccatttggagtaacaataatggcaatgaca |
113 |
Q |
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| T |
3010421 |
gatgaagtgaacttggaaactggaacatataggtactagagcagatctgaattccatcaaattgggttttccatttagagtaacaataatggcaatgaca |
3010322 |
T |
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| Q |
114 |
ctatatgtgcactaatgttcacattgctctttagtgaacatgttgggaaaattggattgtaaccnnnnnnnnnnagagttggtaaccgaaatactaattt |
213 |
Q |
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| T |
3010321 |
ctatatgtgcactaatgttcacattgctctttagtgaacatgttgggaaaattggattgtaacc-tttttttttagagttggtaaccgaaatacttattt |
3010223 |
T |
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| Q |
214 |
ggtcataaacccaaataaaatatgtctgggcacattcacatagctatacaaaatttaaaggnnnnnnnnnntacacctgtaacaataaattatatatatg |
313 |
Q |
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| T |
3010222 |
ggtcataaacccaaataaaatatgtctgggcacattcacatagttacacaaaatttaaagg-aaaaaaaaatccacatgtaacaatacattatttatatg |
3010124 |
T |
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| Q |
314 |
caagcttttccatcaaagattg |
335 |
Q |
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| T |
3010123 |
caagcatttccctcaaagattg |
3010102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 3019131 - 3019051
Alignment:
| Q |
77 |
gggttttccatttggagtaacaataatggcaatgacactatatgtgcactaatgttcacattgctctttagtgaacatgttg |
158 |
Q |
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| T |
3019131 |
gggtttttcatttggagtaacaataatggcaatgaca-tttatatgcaccaacgttcacattgctctttaaagaacatgttg |
3019051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 2764997 - 2764948
Alignment:
| Q |
224 |
ccaaataaaatatgtctgggcacattcacatagctatacaaaatttaaag |
273 |
Q |
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| T |
2764997 |
ccaaataaaatatgtttgggtacactcacatagttacacaaaatttaaag |
2764948 |
T |
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