View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11916_high_23 (Length: 286)

Name: NF11916_high_23
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11916_high_23
NF11916_high_23
[»] chr4 (4 HSPs)
chr4 (1-270)||(23588165-23588434)
chr4 (1-270)||(23597017-23597286)
chr4 (3-270)||(54395890-54396157)
chr4 (36-93)||(9336358-9336415)
[»] chr7 (7 HSPs)
chr7 (1-268)||(8102136-8102403)
chr7 (1-268)||(8017845-8018112)
chr7 (1-184)||(39985199-39985382)
chr7 (27-93)||(8575970-8576036)
chr7 (36-93)||(10494841-10494898)
chr7 (36-93)||(13333835-13333892)
chr7 (18-82)||(8636792-8636856)
[»] chr2 (5 HSPs)
chr2 (6-93)||(16662429-16662516)
chr2 (36-93)||(16657984-16658041)
chr2 (33-92)||(43625057-43625116)
chr2 (3-64)||(17717121-17717182)
chr2 (9-93)||(11999052-11999136)
[»] chr1 (2 HSPs)
chr1 (30-91)||(4679018-4679079)
chr1 (32-93)||(15594678-15594739)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23588165 - 23588434
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23588165 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 23588264  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23588265 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 23588364  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23588365 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataatcaacctggtgtgttgattc 23588434  T

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Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23597017 - 23597286
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||||||| || || ||    
T  23597017 aagatttcttcaatgggaaggaactttgtaagagcatcaaccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgagcggcgaagg 23597116  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||    
T  23597117 caatgagaaagtacaggatcttttgttgctggatgttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaac 23597216  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattc 270  Q
    ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||    
T  23597217 acaacaattcctaccaagaaggagcaggtgttttcgacctattctgataaccaacctggtgtgctgattc 23597286  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 270
Target Start/End: Complemental strand, 54396157 - 54395890
Alignment:
Q  3 gatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgagggca 102  Q
    |||||||||||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || || || ||||| || |||||||| ||||| ||      
T  54396157 gatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagcggtgaaggtg 54396058  T
Q  103 atgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaacac 202  Q
    |||| || || || |||||  ||||||| ||||||||||||||     | || ||||| || || || ||||| |||||    |||||||| || |||||    
T  54396057 atgaaaaggttcaagatcttctgttgcttgatgttactcctcttagtttggggttggaaactgctggtggtgttatgacgactttgattccaaggaacac 54395958  T
Q  203 aaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattc 270  Q
     || |||||||| |||||||||||  | || ||||| ||||| ||||||||||||||||| |||||||    
T  54395957 gacgattcctacgaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattc 54395890  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 9336358 - 9336415
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| ||||| |||||||| ||||| ||||| || |||||||||||||||||||    
T  9336358 atcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgagtg 9336415  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8102403 - 8102136
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||| ||||||||||| |||||||| || || |||||||||||||| || |||||||| ||||| || || || ||||||||||| ||||||||||| ||    
T  8102403 aagacttcttcaatggtaaggagctatgcaaaagcatcaaccccgacgaggctgttgcttatggtgccgctgttcaagctgctatcttgagtggtgaagg 8102304  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
     |||||||| || || ||| ||||| |  ||||||| || ||  | || |  ||||||||||| ||||||||||||||||||||||||||||| || |||    
T  8102303 aaatgagaaggttcaagatttgttgcttttggatgtcaccccattgtctcaaggtttggagactgcaggaggtgtcatgactgtattgattccaaggaac 8102204  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgat 268  Q
    || |||||||| ||||||||||||||||| || || || || || || |||||||||||||| |||||    
T  8102203 actaccattccaaccaagaaggagcaagttttctctacgtattcagacaaccaacctggtgttttgat 8102136  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 8017845 - 8018112
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||||||||||||||| || |||||||| ||||| |||||||| || || |||||||| ||||| || || || ||||| || |||||||||||||| ||    
T  8017845 aagatttcttcaatggtaaagagctttgcaagagtatcaacccagacgaggctgttgcttatggtgccgctgtacaagcagcaattttgagtggtgaagg 8017944  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
    |||||| || || || ||| || || |  ||||||| |||||  | || || ||| | || || || || ||||||||||||||||| ||||| || |||    
T  8017945 caatgaaaaggttcaagatttgctgcttttggatgtcactccattgtctctgggtctagaaactgctggtggtgtcatgactgtattaattccaaggaac 8018044  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgat 268  Q
    || || ||||| ||||||||||||||||| || || || ||||| |||||||||||||||||||||||    
T  8018045 accacaattccaaccaagaaggagcaagttttctctacttactcagataaccaacctggtgtgttgat 8018112  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 39985382 - 39985199
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||||||||| || ||||||||||| || |||||||| || || ||||| |||||||||||||| || || || || |||||||| ||||||||||||||    
T  39985382 aagatttctttaacggaaaggagctatgcaagagcataaatcctgatgaggctgttgcatatggtgctgctgttcaggctgctatcttgagtggtgaggg 39985283  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgt 184  Q
    ||||||||| || ||||||||  |  |  ||||||| || ||||| || |||||||||||||| || || ||||| ||||||||    
T  39985282 caatgagaaggttcaggatcttctccttttggatgtcacccctctatctcttggtttggagactgctggtggtgtgatgactgt 39985199  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8576036 - 8575970
Alignment:
Q  27 tgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    ||||||||||||||||| ||||| |||||||| ||||| || |  |||||||||||| | |||||||    
T  8576036 tgtaagagcatcaaccctgatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtg 8575970  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 10494841 - 10494898
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||    
T  10494841 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 10494898  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 13333835 - 13333892
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||    
T  13333835 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 13333892  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 8636792 - 8636856
Alignment:
Q  18 aaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgc 82  Q
    ||||| || ||||||||||||||| | ||||| |||||||| ||||| ||||| ||||| |||||    
T  8636792 aaggaactgtgtaagagcatcaacgctgatgaggctgttgcttatggagcagcagtccaggctgc 8636856  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 16662429 - 16662516
Alignment:
Q  6 ttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    ||||||||||| |||||| | || |||||||||||||| ||||| |||||||| ||||||||||| || ||||||||| | |||||||    
T  16662429 ttcttcaatgggaaggagttgtgcaagagcatcaaccctgatgaggctgttgcttatggggcagctgtgcaagctgctgtgttgagtg 16662516  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 16657984 - 16658041
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| |||||||||||||| || || ||||| || |||||||||||||||||||    
T  16657984 atcaacccggatgaagctgttgcttacggtgcagctgttcaagctgctattttgagtg 16658041  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 43625116 - 43625057
Alignment:
Q  33 agcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagt 92  Q
    ||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||||    
T  43625116 agcataaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgagt 43625057  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 17717121 - 17717182
Alignment:
Q  3 gatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatgg 64  Q
    |||||||| ||  |||||||||| || |||||||| || |||||||| ||||||||||||||    
T  17717121 gatttctttaacagaaaggagctatgcaagagcattaatcccgatgaggctgttgcatatgg 17717182  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 11999136 - 11999052
Alignment:
Q  9 ttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    ||||| || |||||| | || |||||||| ||||| ||||| ||||| || ||||||||||| || ||||||||| | |||||||    
T  11999136 ttcaacgggaaggagttgtgcaagagcattaaccctgatgaggctgtagcttatggggcagctgttcaagctgctttgttgagtg 11999052  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 4679018 - 4679079
Alignment:
Q  30 aagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgag 91  Q
    ||||| |||||||| ||||| |||||||| ||||| |||||  |||||||||||||||||||    
T  4679018 aagagtatcaacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgag 4679079  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 15594739 - 15594678
Alignment:
Q  32 gagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||| | |||||||    
T  15594739 gagcatcaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtg 15594678  T

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