View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_high_24 (Length: 281)
Name: NF11916_high_24
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 44006826 - 44006659
Alignment:
| Q |
1 |
tggaacgttagtaaaccgagtcctcgagaggtggtagcatgggtttaaagcaagctttaatgtggcttatgaatataagcttctccaaagcgtcaattga |
100 |
Q |
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| T |
44006826 |
tggaacgttagtaaaccgagtcctcgagaggtggtagcatgggtttaaagcaagctttaatgtggcttatgaatataagcttctccaaagcgtcaattga |
44006727 |
T |
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| Q |
101 |
actagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagaggggatagtac |
168 |
Q |
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| T |
44006726 |
actagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagaggggatagtac |
44006659 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 24146980 - 24147094
Alignment:
| Q |
41 |
gggtttaaagcaagctttaatgtgg-cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaag |
139 |
Q |
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| T |
24146980 |
gggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggg-ag |
24147078 |
T |
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| Q |
140 |
acctagtcatagaaca |
155 |
Q |
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| T |
24147079 |
accaagtcatacaaca |
24147094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 24152445 - 24152533
Alignment:
| Q |
66 |
cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaagacctagtcatagaaca |
155 |
Q |
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| T |
24152445 |
cttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggg-agaccaagtcatacaaca |
24152533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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