View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11916_high_3 (Length: 740)

Name: NF11916_high_3
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11916_high_3
NF11916_high_3
[»] chr2 (6 HSPs)
chr2 (301-730)||(6562404-6562831)
chr2 (185-296)||(6563111-6563222)
chr2 (18-89)||(6563223-6563289)
chr2 (214-293)||(223892-223973)
chr2 (239-303)||(36903987-36904051)
chr2 (426-483)||(1901621-1901678)
[»] chr8 (2 HSPs)
chr8 (239-303)||(7642624-7642688)
chr8 (239-303)||(38573316-38573380)
[»] chr4 (9 HSPs)
chr4 (239-303)||(25231534-25231598)
chr4 (239-303)||(31861579-31861643)
chr4 (239-303)||(35808715-35808779)
chr4 (240-303)||(3121083-3121146)
chr4 (238-293)||(9093608-9093663)
chr4 (239-293)||(37624862-37624916)
chr4 (250-303)||(24504700-24504753)
chr4 (239-303)||(16958390-16958454)
chr4 (426-476)||(39331092-39331142)
[»] chr3 (5 HSPs)
chr3 (239-296)||(53466257-53466314)
chr3 (214-303)||(8108237-8108327)
chr3 (214-303)||(45249361-45249452)
chr3 (426-471)||(20948291-20948336)
chr3 (426-471)||(30843669-30843714)
[»] chr7 (9 HSPs)
chr7 (213-293)||(48488419-48488501)
chr7 (213-303)||(28646615-28646707)
chr7 (239-303)||(23247756-23247820)
chr7 (239-303)||(28514663-28514727)
chr7 (239-303)||(37869747-37869811)
chr7 (238-303)||(19086330-19086395)
chr7 (239-303)||(10624971-10625035)
chr7 (239-303)||(45618475-45618539)
chr7 (239-302)||(34503153-34503216)
[»] chr6 (2 HSPs)
chr6 (214-303)||(32147870-32147961)
chr6 (428-489)||(29927636-29927697)
[»] chr1 (3 HSPs)
chr1 (239-296)||(13984272-13984329)
chr1 (436-490)||(2251387-2251441)
chr1 (426-471)||(36144981-36145026)
[»] chr5 (2 HSPs)
chr5 (239-289)||(10285009-10285059)
chr5 (213-303)||(34338930-34339022)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 301 - 730
Target Start/End: Complemental strand, 6562831 - 6562404
Alignment:
Q  301 taaatgtttaagatccttccattgaagatgatctaatagttcttcattgtatctaaattttaaaataactttgattgtgtattaagttagtcaaaacata 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  6562831 taaatgtttaagacccttccattgaagatgatctaatagttcttcattgtatccaaattttaaaataattttgattgtgtattaagttagtcaaaacata 6562732  T
Q  401 ctctgatgttaaaatgatacgttaataatattgtcatatcagtttttcaatatacttatttagtgacatataaatctctataaatatttattgtcgtata 500  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| || ||||| ||||||||||| |||||||||||||||     
T  6562731 ctctgatgttaaaatgatacgttaataatattgtcatatcag-atttcaatatacttatttaatgtcatatcaatctctataattatttattgtcgtatg 6562633  T
Q  501 atctctatatnnnnnnnnnnnntgactctgactattataacaatgactaacgaaacgtacaatcaaataccgattattgtgactgctagttgcctaacca 600  Q
    |||||||||             ||||  | | |||||| || |||| |||||||| ||||||||||||||||||||||||||| |  |||||||||||||    
T  6562632 atctctata--aaaaaaaaaaatgacagtcaatattatgactatgattaacgaaatgtacaatcaaataccgattattgtgaccgtaagttgcctaacca 6562535  T
Q  601 aaaataactatttacccgatgaagagagggtaactaggtccc-aaaagaaaggtaactaggaactaacaacggtaacaaaaagaggttctagttgtacta 699  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6562534 aaaataactatttacccgatcaagagagggtaactaggtccctaaaaaaagggtaactaggaactaacaacggtaacaaaaagaggttctagttgtacta 6562435  T
Q  700 caacgaatctcaatgttttaactgctctctg 730  Q
    |||||||||||||||||||||||||||||||    
T  6562434 caacgaatctcaatgttttaactgctctctg 6562404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 6563222 - 6563111
Alignment:
Q  185 ggtcatgggaaactattaacaatgtgcttattgtttaagcatataaaactaactttttgcattgtaaattgtacggttataatttcaataagtatttgac 284  Q
    |||||||| ||| | |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||     
T  6563222 ggtcatggaaaaatgttaacaatgtccttattgtttaagcatataaaagtaactttttgtattgtaaattgtgcggttataatttcaataagtgtttgat 6563123  T
Q  285 ttatatttttaa 296  Q
    ||||||||||||    
T  6563122 ttatatttttaa 6563111  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 6563289 - 6563223
Alignment:
Q  18 gaaaccacaccttaattaaacatggttaactataactacagtatatttgtgaataatcatgtcttattacaa 89  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  6563289 gaaaccacaccttaattaaacatggttaactataac-----tatatttgtgaataatcatgtcttattacaa 6563223  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 223892 - 223973
Alignment:
Q  214 attgtttaagcatataaaactaac--tttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttt 293  Q
    ||||||||||||| ||||| || |  ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  223892 attgtttaagcatctaaaagtagcaatttttgcattgaaaattgtacggttataacttcaataagtgtttgacttatatttt 223973  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 36904051 - 36903987
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||| | || ||||||| |||||||| |||||| |||||||||    
T  36904051 ttttgcattggaaattgtacggttatgactttaataagtgtttgacttgtattttcaagacataa 36903987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 1901621 - 1901678
Alignment:
Q  426 taatattgtcatatcagtttttcaatatacttatttagtgacatataaatctctataa 483  Q
    |||||||||||||| | |||||||||||| ||||||| || ||||| ||||| |||||    
T  1901621 taatattgtcatattaatttttcaatatatttatttattgtcatatcaatctttataa 1901678  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 7642688 - 7642624
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| || ||||||    
T  7642688 ttttgcattgtaaattgtacggttataacttcaacaagtgtttgacttatattttcaaaacataa 7642624  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 38573380 - 38573316
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||||| ||||| || | ||||||||||||||| ||| |||||    
T  38573380 ttttgcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataa 38573316  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 25231534 - 25231598
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||    
T  25231534 ttttgcattggaaattgtacggttataacttcaacaaatatttgacttatattttcaagacataa 25231598  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 31861579 - 31861643
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||| |||||||||||| || |||| ||||||||||||||| |||||||||    
T  31861579 ttttgcattggaaattgtccggttataattttaacaagtgtttgacttatattttcaagacataa 31861643  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 35808779 - 35808715
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||||| |||||  ||| ||||||||||||||| |||| ||||    
T  35808779 ttttgcattgaaaattgtacggttataacttcaactagtgtttgacttatattttcaagatataa 35808715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 3121146 - 3121083
Alignment:
Q  240 tttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    ||||||||| ||||||||||||||||| ||||| || |  |||||||||||||| |||||||||    
T  3121146 tttgcattgaaaattgtacggttataacttcaacaaatgattgacttatattttcaagacataa 3121083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 9093608 - 9093663
Alignment:
Q  238 tttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttt 293  Q
    ||||||||||| ||||||||||||||||| || || |||| |||||||||||||||    
T  9093608 tttttgcattgaaaattgtacggttataacttaaacaagtgtttgacttatatttt 9093663  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 37624916 - 37624862
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttt 293  Q
    |||||||||| ||||||||||||||||| || || |||| |||||||||||||||    
T  37624916 ttttgcattgaaaattgtacggttataactttaacaagtgtttgacttatatttt 37624862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 24504753 - 24504700
Alignment:
Q  250 aaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    ||||||||||||||||| || |||||||||||||| |||||||| |||| ||||    
T  24504753 aaattgtacggttataactttaataagtatttgacatatattttaaagatataa 24504700  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 16958390 - 16958454
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||| ||||| |||||| ||| |||||| ||||| |||| ||||||||||||||| |||||||||    
T  16958390 ttttacattggaaattgcacgtttataacttcaacaagtgtttgacttatattttcaagacataa 16958454  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 39331142 - 39331092
Alignment:
Q  426 taatattgtcatatcagtttttcaatatacttatttagtgacatataaatc 476  Q
    ||||||||| |||||||| |||||||||||||||||| || ||||| ||||    
T  39331142 taatattgttatatcagtctttcaatatacttatttattgtcatatcaatc 39331092  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 53466257 - 53466314
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaa 296  Q
    |||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||    
T  53466257 ttttgcattgaaaattgtacgattataacttcaataagtgtttgacttatatttttaa 53466314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 8108327 - 8108237
Alignment:
Q  214 attgtttaagcatataaaactaact--ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    ||||||||||||| ||||| ||||   |||||||||| ||||||||||||||||| ||||| ||||  |||||||||||||| ||| |||||    
T  8108327 attgtttaagcatctaaaagtaacaacttttgcattggaaattgtacggttataacttcaacaagt-gttgacttatattttcaaggcataa 8108237  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 45249361 - 45249452
Alignment:
Q  214 attgtttaagcatataaaactaact--ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    ||||||||||||||||||| || |   |||||||||| ||||||||||||||| | || || || | |||||||| |||||| |||||||||    
T  45249361 attgtttaagcatataaaagtagcaacttttgcattggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataa 45249452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 20948291 - 20948336
Alignment:
Q  426 taatattgtcatatcagtttttcaatatacttatttagtgacatat 471  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||    
T  20948291 taatattatcatatcagttcttcaatatacttatttattgtcatat 20948336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 30843669 - 30843714
Alignment:
Q  426 taatattgtcatatcagtttttcaatatacttatttagtgacatat 471  Q
    |||||||||||||| ||| |||||||||||||||||| || |||||    
T  30843669 taatattgtcatattagtctttcaatatacttatttattgtcatat 30843714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 48488419 - 48488501
Alignment:
Q  213 tattgtttaagcatataaaactaact--ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttt 293  Q
    |||||||||||||| ||||| || |   |||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||    
T  48488419 tattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttcaacaagtgtttgacttatatttt 48488501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 28646615 - 28646707
Alignment:
Q  213 tattgtttaagcatataaaactaact--ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||||||||||||| || |   |||| ||||| ||||||||||||||| | || || || | |||||||||||||||||||||||||    
T  28646615 tattgtttaagcatataaaagtagcaacttttacattggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataa 28646707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 23247756 - 23247820
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| |||||| |||||||||| ||||| |||| ||||||||||||||| ||| |||||    
T  23247756 ttttgcattggaaattgaacggttataacttcaacaagtgtttgacttatattttcaaggcataa 23247820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 28514727 - 28514663
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||||| || || |||| ||||||||||||||| ||| |||||    
T  28514727 ttttgcattggaaattgtacggttataacttgaacaagtgtttgacttatattttcaaggcataa 28514663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 37869747 - 37869811
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||| | || || |||| |||||||||||||||||| ||||||    
T  37869747 ttttgcattgaaaattgtacggttatgactttaacaagtgtttgacttatatttttaaaacataa 37869811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 19086395 - 19086330
Alignment:
Q  238 tttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    ||||||| ||| |||||||||||| |||| ||||| |||| ||||||||||||||| ||| |||||    
T  19086395 tttttgctttggaaattgtacggtaataacttcaacaagtgtttgacttatattttcaaggcataa 19086330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 10625035 - 10624971
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||||||||| | |  ||||||| |||||||| |||||| |||||||||    
T  10625035 ttttgcattgaaaattgtacggttatgactataataagtgtttgacttgtattttcaagacataa 10624971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 45618475 - 45618539
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||| ||||||||| ||| | | || ||||| ||||||||||||||||| |||||||||    
T  45618475 ttttgcattgaaaattgtaccgttgtgactttaataaatatttgacttatattttcaagacataa 45618539  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 34503216 - 34503153
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacata 302  Q
    ||||| |||| |||||||||  |||||||||||| |||| ||||| ||||||||| ||||||||    
T  34503216 ttttgaattgaaaattgtactattataatttcaacaagtgtttgatttatattttcaagacata 34503153  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 32147870 - 32147961
Alignment:
Q  214 attgtttaagcatataaaacta--actttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    ||||||||||||||||||| ||  | ||||||||||| ||||||||||||||| | || ||||| ||||||| || |||||| || ||||||    
T  32147870 attgtttaagcatataaaagtagtaatttttgcattgcaaattgtacggttatgactttaataaatatttgatttgtattttcaaaacataa 32147961  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 29927697 - 29927636
Alignment:
Q  428 atattgtcatatcagtttttcaatatacttatttagtgacatataaatctctataaatattt 489  Q
    |||||||||||| |||| ||||||| ||||||||| || ||||| ||| |||||| ||||||    
T  29927697 atattgtcatattagttcttcaataaacttatttattgtcatattaatttctatagatattt 29927636  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 13984272 - 13984329
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaa 296  Q
    |||| ||||| |||| |||||||||||| |||||||| | ||||||||||||||||||    
T  13984272 ttttacattggaaatcgtacggttataacttcaataaatgtttgacttatatttttaa 13984329  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 2251441 - 2251387
Alignment:
Q  436 atatcagtttttcaatatacttatttagtgacatataaatctctataaatattta 490  Q
    |||||||||| |||||||| |||||||  ||||||| || |||||||||||||||    
T  2251441 atatcagtttctcaatatatttatttatcgacatatcaacctctataaatattta 2251387  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 36145026 - 36144981
Alignment:
Q  426 taatattgtcatatcagtttttcaatatacttatttagtgacatat 471  Q
    |||||||||||||| |||||||||||||||||| ||| || |||||    
T  36145026 taatattgtcatattagtttttcaatatacttagttattgtcatat 36144981  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 10285009 - 10285059
Alignment:
Q  239 ttttgcattgtaaattgtacggttataatttcaataagtatttgacttata 289  Q
    ||||| |||| ||||||||||||||||| ||||| || |||||||||||||    
T  10285009 ttttgtattggaaattgtacggttataacttcaacaaatatttgacttata 10285059  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 34339022 - 34338930
Alignment:
Q  213 tattgtttaagcatataaaactaact--ttttgcattgtaaattgtacggttataatttcaataagtatttgacttatatttttaagacataa 303  Q
    |||||||||||||| ||||| || |   |||||||||| ||| |||  |||||||| ||||| |||| ||||||||||||||| ||| |||||    
T  34339022 tattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataacttcaacaagtgtttgacttatattttcaaggcataa 34338930  T

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