View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_high_4 (Length: 717)
Name: NF11916_high_4
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Complemental strand, 44006826 - 44006118
Alignment:
| Q |
1 |
tggaacgttagtaaaccgagtcctcgagaggtggtagcatgggtttaaagcaagctttaatgtggcttatgaatataagcttctccaaagcgtcaattga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006826 |
tggaacgttagtaaaccgagtcctcgagaggtggtagcatgggtttaaagcaagctttaatgtggcttatgaatataagcttctccaaagcgtcaattga |
44006727 |
T |
|
| Q |
101 |
actagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagaggggatagtactttattggcttgtacgacaatcttgtattctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44006726 |
actagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagaggggatagtactttattggcttgtacgacaatcttgtattctt |
44006627 |
T |
|
| Q |
201 |
taccaaacttttggataggttttattcggaggcaaaccaacaatgttgctcatcttctagctagagcagcattgttttatgctagttgccaagtttttga |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006626 |
taccaaacttttggagaggttttattcggagacaaaccaacaatgttg--------ctagctagagcagcattgttttatgctagttgccaagtttttga |
44006535 |
T |
|
| Q |
301 |
ctatattcctccataaattaatactactttgatgaatgtcnnnnnnnnnnnncctaaatcggtaatactaataacaaataaatacgcagatgacactaaa |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006534 |
ctatattcctccatatattaatactactttgatgaatgccaaaaaaaaaaaacctaaatcggtaatactaataacaaataaatacgcagatgacactaaa |
44006435 |
T |
|
| Q |
401 |
agatgccgaaaaac--ttttactaatgaagagttatcacacatcaattgattactttttcttgattgataattggctactataaacatggttattggtta |
498 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006434 |
agatgccgaaaaacttttttactaatgaagagttatcacacatcaattgattactttttcttgattgataattggctactataaacatggttattggtta |
44006335 |
T |
|
| Q |
499 |
aataattttttccgtaatgacataatcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagnnnnnnncaaagaaaaa |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44006334 |
aataattttttccgtaatgacataatcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagtttttttcaaagaaaaa |
44006235 |
T |
|
| Q |
599 |
catccgattactatagacannnnnnnnnnnnngaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaa |
698 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006234 |
catccgattactatagaca-tattttttttttgaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaa |
44006136 |
T |
|
| Q |
699 |
tacaaaagagagaaacaa |
716 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
44006135 |
tacaaaagagagaaacaa |
44006118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 66 - 338
Target Start/End: Original strand, 24152445 - 24152715
Alignment:
| Q |
66 |
cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaagacctagtcatagaacagag-gggata |
164 |
Q |
| |
|
||||||||| || |||||| ||||| || ||||||||||||||||||||| || | || |||||||||||| |||| ||||||| |||| || ||| || |
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| T |
24152445 |
cttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggga-gaccaagtcatacaacatagtggggta |
24152543 |
T |
|
| Q |
165 |
gtactttattggcttgtacgacaatcttgtattctttaccaaacttttggataggttttattcggaggcaaaccaacaatgttgctcatcttctagctag |
264 |
Q |
| |
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||| ||||| ||||| | ||| | || |||||||||||||||||| ||||| ||||| ||||||| ||||| |||||| ||| ||| ||||||||||| |
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|
| T |
24152544 |
gtattttatgtgcttgcaaaacatttttatattctttaccaaactttcggataagttttcttcggagacaaacaaacaatattgttcaccttctagctag |
24152643 |
T |
|
| Q |
265 |
agcagcattgttttatgctagttgccaagtttttgactatattcctccataaattaatactactttgatgaatg |
338 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||| |
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|
| T |
24152644 |
tc--gcattgtcttatgctagttgccaagtctttgattatattcctccatgtattactactactttgatgaatg |
24152715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 41 - 338
Target Start/End: Original strand, 24146980 - 24147276
Alignment:
| Q |
41 |
gggtttaaagcaagctttaatgtgg-cttatgaatataagcttctccaaagcgtcaattgaactagattccaaactagtcatagatggcatggcgggaag |
139 |
Q |
| |
|
|||| ||||||||||| || |||| ||||||||| || |||||| ||||| || ||||||||||||||||||||| || | || |||||||||||| | |
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| T |
24146980 |
gggtctaaagcaagctctactgtgttcttatgaatttaggcttctgcaaagtgtttattgaactagattccaaactactcgtggacggcatggcggga-g |
24147078 |
T |
|
| Q |
140 |
acctagtcatagaacagag-gggatagtactttattggcttgtacgacaatcttgtattctttaccaaacttttggataggttttattcggaggcaaacc |
238 |
Q |
| |
|
||| ||||||| |||| || ||| ||||| ||||| ||||| | ||| | || ||||||||||||||||| ||||| ||||| ||||||| ||||| |
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|
| T |
24147079 |
accaagtcatacaacaaagtggggtagtattttatgtgcttgcaaaacatttttatattctttaccaaacttacggataagttttcttcggagacaaaca |
24147178 |
T |
|
| Q |
239 |
aacaatgttgctcatcttctagctagagcagcattgttttatgctagttgccaagtttttgactatattcctccataaattaatactactttgatgaatg |
338 |
Q |
| |
|
|||||||||||||| ||||||||||| | || |||| || ||||||||||||||| | ||| ||||| ||||||| |||| |||||||||||| |||| |
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|
| T |
24147179 |
aacaatgttgctcaccttctagctagtg--gcgttgtcttgtgctagttgccaagtctctgattatatacctccatgtattactactactttgattaatg |
24147276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 338
Target Start/End: Original strand, 43227988 - 43228140
Alignment:
| Q |
186 |
caatcttgtattctttaccaaacttttggataggttttattcggaggcaaaccaacaatgttgctcatcttctagctagagcagcattgttttatgctag |
285 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| ||| |||| |||||||| |||| |||||| || | ||| |
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|
| T |
43227988 |
caatcttgtattctataccaaactttcggataaattttacacggagataaaccaataatattgcatatcttctatctagtatgacattgtcttgtactat |
43228087 |
T |
|
| Q |
286 |
ttgccaagtttttgactatattcctccataaattaatactactttgatgaatg |
338 |
Q |
| |
|
|| |||||||||| |||||||||||||| |||| |||||| |||||||||| |
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|
| T |
43228088 |
ttcttaagtttttgattatattcctccatatattattactaccttgatgaatg |
43228140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 35379060 - 35379011
Alignment:
| Q |
196 |
ttctttaccaaacttttggataggttttattcggaggcaaaccaacaatg |
245 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||| || ||||||||| |
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|
| T |
35379060 |
ttctttaccaaactttaggttaggttttattcgaaggtaagccaacaatg |
35379011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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