View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11916_high_5 (Length: 639)
Name: NF11916_high_5
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 316 - 622
Target Start/End: Complemental strand, 9131047 - 9130741
Alignment:
| Q |
316 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131047 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9130948 |
T |
|
| Q |
416 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
9130947 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccg |
9130848 |
T |
|
| Q |
516 |
tttaaaggggagccctcggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatg |
615 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9130847 |
cttaaaggggagcccttggttattctatgaatggagttgggattcgggagaatgattgaagaggagtctagctgcagcagatcagtggtccgtctggatg |
9130748 |
T |
|
| Q |
616 |
tcttttt |
622 |
Q |
| |
|
||||||| |
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|
| T |
9130747 |
tcttttt |
9130741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 316 - 622
Target Start/End: Complemental strand, 9122940 - 9122645
Alignment:
| Q |
316 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9122940 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9122841 |
T |
|
| Q |
416 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
515 |
Q |
| |
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| T |
9122840 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagaga-----------ttgtcgatgagatcaaagtgttatctttgaaatggagtcttagccg |
9122752 |
T |
|
| Q |
516 |
tttaaaggggagccctcggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatg |
615 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9122751 |
tttaaaggggagcccttggttattctatgaatggagttgagatccgggagaatgattgaagaggagtcgagctgcagcagatcagtggtccgtctggatg |
9122652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 9123302 - 9123100
Alignment:
| Q |
13 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattataggaagga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||| | |||||||| |
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| T |
9123302 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaagga |
9123204 |
T |
|
| Q |
113 |
actgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggtttatttatcactgccaa |
212 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |
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| T |
9123203 |
act-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaa |
9123105 |
T |
|
| Q |
213 |
cgtct |
217 |
Q |
| |
|
||||| |
|
|
| T |
9123104 |
cgtct |
9123100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 9131409 - 9131207
Alignment:
| Q |
13 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattataggaagga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||| | |||||||| |
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|
| T |
9131409 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaagga |
9131311 |
T |
|
| Q |
113 |
actgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggtttatttatcactgccaa |
212 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |
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|
| T |
9131310 |
act-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaa |
9131212 |
T |
|
| Q |
213 |
cgtct |
217 |
Q |
| |
|
||||| |
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|
| T |
9131211 |
cgtct |
9131207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 9123089 - 9123039
Alignment:
| Q |
267 |
attatcagttactcttgtagatattactgccaatgtctttatttgatgttt |
317 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9123089 |
attatcagttactcttatagttattactgccaatgtctttatttgatgttt |
9123039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 9131196 - 9131146
Alignment:
| Q |
267 |
attatcagttactcttgtagatattactgccaatgtctttatttgatgttt |
317 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9131196 |
attatcagttactcttatagttattactgccaatgtctttatttgatgttt |
9131146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 332 - 622
Target Start/End: Complemental strand, 24524885 - 24524595
Alignment:
| Q |
332 |
tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
431 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524885 |
tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
24524786 |
T |
|
| Q |
432 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
24524785 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagccct |
24524686 |
T |
|
| Q |
532 |
cggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttt |
622 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524685 |
tggttattctatgaatggagttgggattcgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttt |
24524595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 24525170 - 24524997
Alignment:
| Q |
13 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattat---aggaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||| ||||| |
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|
| T |
24525170 |
cagagattgggaagatggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaattacaatgcatgtattatcataggaa |
24525071 |
T |
|
| Q |
110 |
ggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt |
184 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525070 |
ggaact-tcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt |
24524997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 24524967 - 24524921
Alignment:
| Q |
229 |
atatcaagtcactgcaactcatactatatagatggtcaattatcagttact |
279 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24524967 |
atatgaagtcactgcaactcata----atagatggtcaattatcagttact |
24524921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 369 - 531
Target Start/End: Complemental strand, 10323301 - 10323138
Alignment:
| Q |
369 |
aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga |
467 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||| |||| |
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|
| T |
10323301 |
aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga |
10323202 |
T |
|
| Q |
468 |
tattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
531 |
Q |
| |
|
|||||||||||| ||||| |||| || | | |||| |||||| ||| |||||||||||||||| |
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|
| T |
10323201 |
tattgtggatgaaatcaagatgttgtcatggtaatgaagtctttgccatttaaaggggagccct |
10323138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 577 - 622
Target Start/End: Complemental strand, 10323126 - 10323081
Alignment:
| Q |
577 |
aggagtccagctgcagcagatcagtggtccgtctggatgtcttttt |
622 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
10323126 |
aggagtccagctgaagcagataagtggtccgtctggatgtcatttt |
10323081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 9039033 - 9039096
Alignment:
| Q |
18 |
attgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgca |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
9039033 |
attgggaagaaggagaaattatcattctcgattaattagttttttatctttaggaatgactgca |
9039096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
| Q |
23 |
gaagaaggagaaattatcattctcgattaattagctttttat |
64 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39815109 |
gaagaaggagaagttatcattctcgattaattagctttttat |
39815150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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