View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_high_6 (Length: 576)
Name: NF11916_high_6
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 38370730 - 38371283
Alignment:
| Q |
18 |
actcacatccaagtagcattttttatcatcatctacaaactgaaccaagaaaaagaaaggnnnnnnnnngagttatttaaccaagaaaaacaaataagaa |
117 |
Q |
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| T |
38370730 |
actcacatccaagtagcattttttatcatcatctacaaactgaaccaagaaaaagaaaa-aaaaaaaaagagttatttaaccaagaaaaacaaataagaa |
38370828 |
T |
|
| Q |
118 |
attcaacttgatgaatattaattttaccttggttcttgctgcataggttcctctagcaaatataccagaaggagtagttttttcttccaattcatatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370829 |
attcaacttgatgaatattaattttaccttggttcttgctgcataggttcctctagcaaatataccagaaggagtagttttttcttccaattcatatgta |
38370928 |
T |
|
| Q |
218 |
tatggttcatgctgaggactaaaagttcccaacannnnnnnnctgctgtccactgttgcaacaaatccattcccatgttactaactaagatatttaatta |
317 |
Q |
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| T |
38370929 |
tatggttcatgctgaggactaaaagttcccagcatttttttcctgctgttcactgttacaacaaatccattcccatgttactaactaagatatttaatta |
38371028 |
T |
|
| Q |
318 |
atttaaattcattaaaatgaaagtatttgtcgcacctctaaccccagttttccaaacaatattggtgtatttgagaccagaaacaatgttgtttgagaca |
417 |
Q |
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| T |
38371029 |
atttaaattcattaaaatgaaagtatttgtcgcacctctaaccccagttttcgaaacaatattggtgtatttgagaccagaaacaatgttgtttgagaca |
38371128 |
T |
|
| Q |
418 |
gtgaaggtgaatttcattctacattgacttccttccttaagaatgaagagactcttcttaggatcattagtaaatggaattggcaggacaagatcaggcc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38371129 |
gtgaaggtgaatttcattctacattgacttccttccttaagaatgaagagactcttcttaggatcattagtaaatggaattggcaggacaagatcaggac |
38371228 |
T |
|
| Q |
518 |
tcactgaacat---gtaatagttaggctttgtatcttcacttctggatctctgct |
569 |
Q |
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| T |
38371229 |
tctctgaacatgtagtaatagttaggctttgtatcttcacttctggatctttgct |
38371283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 34880627 - 34880517
Alignment:
| Q |
141 |
ttaccttggttcttgctgcataggttcctctagcaaatataccagaaggagtagttttttcttccaattcatatgtatatggttcatgctgaggactaaa |
240 |
Q |
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| T |
34880627 |
ttaccttggttcttgctgaataggttcctctagcaaacaagcctgaaggggtaatttcttcttccaattcatatgtatatggttcctgctgtgggctata |
34880528 |
T |
|
| Q |
241 |
agttcccaaca |
251 |
Q |
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||||||||||| |
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| T |
34880527 |
agttcccaaca |
34880517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 431
Target Start/End: Complemental strand, 34880406 - 34880320
Alignment:
| Q |
345 |
tgtcgcacctctaaccccagttttccaaacaatattggtgtatttgagaccagaaacaatgttgtttgagacagtgaaggtgaattt |
431 |
Q |
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|||| |||||||||| |||||||||||||||| |||||||||| |||| |||||||| |||||||| ||||||||||||| |||||| |
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| T |
34880406 |
tgtctcacctctaactccagttttccaaacaacattggtgtatctgaggccagaaactatgttgttggagacagtgaaggagaattt |
34880320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 34880947 - 34880907
Alignment:
| Q |
23 |
catccaagtagcattttttatcatcatctacaaactgaacc |
63 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
34880947 |
catccaagtagcatttgcgatcatcatctacaaactgaacc |
34880907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 52894283 - 52894171
Alignment:
| Q |
138 |
attttaccttggttcttgctgcataggttcctctagcaaatataccagaaggagtagttttttcttccaattcatatgtatatggttcatgctgaggact |
237 |
Q |
| |
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||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| |||| |||||||||||||||||| ||| || |||| |||| |
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| T |
52894283 |
attttaccttggttcttagtgcataggctcccctagcaaatatactcgaaggagt-gtttcttcttccaattcatatgtttatattttccactgacgact |
52894185 |
T |
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| Q |
238 |
aaaagttcccaaca |
251 |
Q |
| |
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|||||||||||||| |
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| T |
52894184 |
aaaagttcccaaca |
52894171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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