View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_high_7 (Length: 509)
Name: NF11916_high_7
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 170806 - 171125
Alignment:
| Q |
1 |
ttttcacaatatgctttacctttgtttcgcctaagatcttgactctctttcatatacaaatcgtcgccttgagttctttcctctaaattttttctccttt |
100 |
Q |
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| T |
170806 |
ttttcacaatatgctttacctttgtttcgcctaagatcttgactctctttcatatacaaatcgtcgccttgagttctttcctctaaattttttctccttt |
170905 |
T |
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| Q |
101 |
agaatgatacaagaatgaagcattaattacatcgatgttggtagtgtctttctcataggtaagacctgggaacgagcataacaaaataattaccttgtct |
200 |
Q |
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| T |
170906 |
agaatgatacaagaatgaagcattaattacatcgatgttggtagtgtctttctcataggtaagacctgggaacgagcataacaaaataattaccttgtct |
171005 |
T |
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| Q |
201 |
ttctcatcgatctttaccccaaacctaaccagatcaacgatcatttgttgaagacattaacatgttgcgaaccaagtcattcatacatctttcggttgta |
300 |
Q |
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| T |
171006 |
ttctcatcgatctttaccccagacctaaccagatcaacgatcatttgttgaagacattaacatgttgcgaaccaagtcattcatacatctttcggttgta |
171105 |
T |
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| Q |
301 |
tagtcactgcttcacaaata |
320 |
Q |
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| T |
171106 |
tagtcactgcttcacaaata |
171125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 319 - 503
Target Start/End: Original strand, 171271 - 171455
Alignment:
| Q |
319 |
tagtttctttatcagcgtcttggtcatatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtct |
418 |
Q |
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| T |
171271 |
tagtttatttatcagcgtcttggtcatatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtct |
171370 |
T |
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| Q |
419 |
gaaacacataaacatatcaatcatgtgaccttctttatcatctctacttaagtggtatcctctatgttggttggtttcatctcac |
503 |
Q |
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| T |
171371 |
gaaacacataaacatatcaatcatgtgaccttctttatcatctctacttaagcggtatcctctatgttggttggtttcatctcac |
171455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 10811500 - 10811577
Alignment:
| Q |
343 |
catatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtctga |
420 |
Q |
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|||||||| ||| |||||||||||||||||||||||||| || | | |||||| |||||||||| ||||| ||||| |
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| T |
10811500 |
catatactaactcttcaatttatctcaaacctccttcaaggtcgacaagtccatggtatgatacataacctcttctga |
10811577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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