View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_1 (Length: 916)
Name: NF11916_low_1
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 177 - 900
Target Start/End: Complemental strand, 4252110 - 4251357
Alignment:
| Q |
177 |
caaaagataaatactactttaaggatgcgtgttgtaattgttcatataagaatgctaattttaaca-------------caaattttaaaaatagaaaat |
263 |
Q |
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| T |
4252110 |
caaaagataaatactactttaaggatgcgtgttgtaattgttcatataggaatgctaattttaacaagtgaaattaacacaaattttaaaaatagaaaat |
4252011 |
T |
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| Q |
264 |
agttttataaggtaaatgaggtttaatattttattgaacctattatatcattaaataaatcaatgatcatcgacctgcaata-----------------t |
346 |
Q |
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| T |
4252010 |
agttttataaggtaaatgaggtttaatatttcatcgaacctattatatcattaagtaaatcaatgatcattgacatgcaatataagaaatcacatacgat |
4251911 |
T |
|
| Q |
347 |
aaa-----aaatcatctcgattatatgttgttgaacgtctaatttttcatctaatgtaaaatttctcac---------tcacacaacacatgtgagtgag |
432 |
Q |
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||| |||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||| |
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| T |
4251910 |
aaatatttaaatcatctcaattatatgttgttgaacgtcta-----------aatgtaaaatttctaactcacatccatcacacaacacat----gtgag |
4251826 |
T |
|
| Q |
433 |
ggaaaagaaagtattccaattgaaactctt-aatttattcttaannnnnnngaagtcaattcttatggttatttttggatcatttgaaagttgaaagtgc |
531 |
Q |
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| T |
4251825 |
gcaaaagaaagtattccaattgaaactcttaaatttattcttaatttttttaaagtcaattcttatggttatttttggatcatttgaaagttgaaagtgc |
4251726 |
T |
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| Q |
532 |
aaagtgccacgtttgagacgtgtagaaaaagtatagcgtataaaatgtgcttggtgggcgcacgaacttaacacaacaacgccaccacattaacacacag |
631 |
Q |
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| T |
4251725 |
aaagtgccacgtttgagacgtgtagaaaaagtatagcgtataaaatgtgcttggtgggcgcacgaacttaacacaacaacgccaccacattaactcacag |
4251626 |
T |
|
| Q |
632 |
ttatcacacaacttcatttcgccggcaaccaaacgatgagctccggcgacggagtagatgagtcttatcgatcacttccatcgctatatctaaccttctt |
731 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251625 |
ttatcacacaacttcatttcgccggcaaccaaacgatgagctccggcgacggagtagacgagtcttatcgatcacttccatcgctatatctaaccttctt |
4251526 |
T |
|
| Q |
732 |
gtcaatctggttcgtctcagcttgttcatggaccgcttatacttacaaaacccgccattttcaggttcctatcgatttcattcttcataattgtagcatg |
831 |
Q |
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| T |
4251525 |
gtcaatctggttcgtctcagcttgttcatggaccgcttatacttacaaaacccgccattttcaggttcctatcgatttcattcttcataattgtagcatg |
4251426 |
T |
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| Q |
832 |
ttagtttcaattttagatgataatgaataattgaatttcaaactgaatgtttctatgttgagaaatgag |
900 |
Q |
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| T |
4251425 |
ttagtttcaattttagatgataatgaataattgaatttcaaactgaatgtttctatgttgagaaatgag |
4251357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 4252267 - 4252128
Alignment:
| Q |
11 |
cacagacaccttacttattcacttttaaaagatgaatttttagccaccgaaaatttgacnnnnnnnn-tgtttttattttaataacttgttagtaaaaag |
109 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||| |
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| T |
4252267 |
cacaaacaccttatttattcacttttaaaaggtgaatttttagccactagagatttgacaaaaaaaaatatttttattttaataacttgttagtaaaaag |
4252168 |
T |
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| Q |
110 |
atgaaagacacttaagatgtatagagaagataaattctac |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4252167 |
atgaaagacacttaagatgtatagagaagataaattctac |
4252128 |
T |
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