View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11916_low_11 (Length: 441)
Name: NF11916_low_11
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 3009656 - 3010073
Alignment:
| Q |
18 |
gtatgttccttaaggtttctgaaaattcatatgcaacatagttgattgatatgttagcttaaccaccaagttattaaattgcagttacatacttacagtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3009656 |
gtatgttccttaaggtttctgaaaattcatatgcaacatagttgattgatatgttagcttaaccaccaagttattaaattgcagttacatacttacagtc |
3009755 |
T |
|
| Q |
118 |
atggttgcatctcaagctcttgttaagaatagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataattagnnnnnnnnacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3009756 |
atggttgcatctcaagctcttgttaagaatagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataattagttttttttacct |
3009855 |
T |
|
| Q |
218 |
gtctaaactaccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3009856 |
gtctaaactaccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcacaaacagtattaacatgatgaccaagattaag |
3009955 |
T |
|
| Q |
318 |
accacagtaatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3009956 |
accacagtaatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgct |
3010055 |
T |
|
| Q |
418 |
tccactttcctatgcttc |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3010056 |
tccactttcctatgcttc |
3010073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 358
Target Start/End: Complemental strand, 54724744 - 54724647
Alignment:
| Q |
261 |
agtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatggg |
358 |
Q |
| |
|
||||||||||| || |||||||| |||||||| || ||||||||||| || || || || || || || ||||| |||| ||||||||||| ||||| |
|
|
| T |
54724744 |
agtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatcaaaactaccgtgataaacttgccaagcccttcttataccatggg |
54724647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University