View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11916_low_12 (Length: 428)

Name: NF11916_low_12
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11916_low_12
NF11916_low_12
[»] chr7 (5 HSPs)
chr7 (23-408)||(35354651-35355036)
chr7 (203-406)||(35380837-35381040)
chr7 (206-401)||(35370278-35370473)
chr7 (23-123)||(35379155-35379255)
chr7 (23-123)||(35369796-35369896)
[»] chr4 (4 HSPs)
chr4 (205-401)||(19684483-19684679)
chr4 (23-123)||(19630480-19630580)
chr4 (205-401)||(19630147-19630344)
chr4 (23-123)||(19684217-19684317)
[»] chr8 (4 HSPs)
chr8 (23-101)||(2258460-2258538)
chr8 (25-101)||(2280450-2280526)
chr8 (326-383)||(2251396-2251453)
chr8 (326-383)||(2256744-2256801)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 408
Target Start/End: Original strand, 35354651 - 35355036
Alignment:
Q  23 actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa 122  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35354651 actattggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcaccattcttcaattgttactgagcctatcacttgtatgaa 35354750  T
Q  123 cnnnnnnnnnnnnnnnnnngcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacc 222  Q
    |                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354751 ctttttttctttcatttttgcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaactttcttatgtattttgacagctgtgacacacc 35354850  T
Q  223 catttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatttggctatat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  35354851 catttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggctgcactatatggctatgt 35354950  T
Q  323 attttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttga 408  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35354951 ctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaactcctctcttactttcccattttga 35355036  T

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Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 203 - 406
Target Start/End: Original strand, 35380837 - 35381040
Alignment:
Q  203 tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg 302  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  35380837 tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg 35380936  T
Q  303 gctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 402  Q
    |||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380937 gctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 35381036  T
Q  403 tttt 406  Q
    ||||    
T  35381037 tttt 35381040  T

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Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 206 - 401
Target Start/End: Original strand, 35370278 - 35370473
Alignment:
Q  206 gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct 305  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35370278 gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 35370377  T
Q  306 gcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccc 401  Q
    ||||||| ||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  35370378 gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccc 35370473  T

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Target: chr7; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 35379155 - 35379255
Alignment:
Q  23 actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa 122  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  35379155 actattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctatcacttgtatgaa 35379254  T
Q  123 c 123  Q
    |    
T  35379255 c 35379255  T

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Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 35369796 - 35369896
Alignment:
Q  23 actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa 122  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||    
T  35369796 actattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctgtcacttgtatgaa 35369895  T
Q  123 c 123  Q
    |    
T  35369896 c 35369896  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 205 - 401
Target Start/End: Original strand, 19684483 - 19684679
Alignment:
Q  205 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggc 304  Q
    ||||||| |||||||| |||||||| |||   ||| ||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||   |||||     
T  19684483 tgacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggt 19684582  T
Q  305 tgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccc 401  Q
    |||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  19684583 tgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccc 19684679  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 19630580 - 19630480
Alignment:
Q  23 actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa 122  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  19630580 actattggctacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattcttcaattgtcaccgagcctatcacttgtatgaa 19630481  T
Q  123 c 123  Q
    |    
T  19630480 c 19630480  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 205 - 401
Target Start/End: Complemental strand, 19630344 - 19630147
Alignment:
Q  205 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttga-caacattgttcatcaaaaaatcttctgtgg 303  Q
    |||||||||||| |||||||||||| |||   ||| ||||||| |||||||||  ||| ||||| |||| ||||| ||||| | |||||||| ||| | |    
T  19630344 tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg 19630245  T
Q  304 ctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccc 401  Q
    ||||  | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  19630244 ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccc 19630147  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 19684217 - 19684317
Alignment:
Q  23 actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttactgagcctatcacttgtatgaa 122  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| || |||||||||||||| ||||| ||||||||| |||||||    
T  19684217 actattggctacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattcttcaattgtcactgaacctatcactggtatgaa 19684316  T
Q  123 c 123  Q
    |    
T  19684317 c 19684317  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 2258538 - 2258460
Alignment:
Q  23 actattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac 101  Q
    |||||||| |||| |||||||||||||| ||||  || || ||| | |||||||||||||| |||||||| ||||||||    
T  2258538 actattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac 2258460  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 2280526 - 2280450
Alignment:
Q  25 tattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac 101  Q
    |||||| |||| |||||||||||||| ||||  || || ||| | |||||||||||||| |||||||| ||||||||    
T  2280526 tattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac 2280450  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
Q  326 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 383  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2251396 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
Q  326 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 383  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2256801 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2256744  T

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